Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 226 a.a., L-amino acid ABC transporter (Glu/Asp/His/...), permease protein 1 AapQ from Variovorax sp. SCN45

 Score =  209 bits (533), Expect = 5e-59
 Identities = 118/222 (53%), Positives = 153/222 (68%), Gaps = 2/222 (0%)

Query: 181 LAKPIFESGSIWVL-VALIAGIIACWVLSIWATNRQRLTGQQTPMGRYILLLCVTFPVLV 239
           L  P  E  S+  + V L   + A +++++    R R TG   P+  + + L +  P+  
Sbjct: 6   LLVPAVEGHSVTAIGVGLAIAVGAIFLVALLQRVRFRQTGHARPLWPWAIGLGIALPLAG 65

Query: 240 YFLLGQPITAEYPVLRGFNFQGGISVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQ 299
           + L GQ +  + P   GF+F+GG S+ PEL ALL  L  YTA+FIAEIVR+GI A+  GQ
Sbjct: 66  WLLAGQDVRLDLPRASGFSFEGGWSLSPELFALLAGLITYTAAFIAEIVRAGIQAIGQGQ 125

Query: 300 TEAAMSLGLTRTKTLKLVIIPQALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGT 359
            EAA SLGL R K L+LVI+PQALR+I+PPLTSQYLNL K+SSLA+AIGYPDLVSV   T
Sbjct: 126 WEAAQSLGLRRGKVLRLVIVPQALRVIVPPLTSQYLNLIKHSSLAVAIGYPDLVSV-VNT 184

Query: 360 TLNQTGQAIEIISMTMLVYLTLSLLTSALMNLYNRKVALVER 401
           TLNQTGQAIE I + M  ++T+SLL S LMN YN+++ALVER
Sbjct: 185 TLNQTGQAIEGILIIMGAFMTVSLLISLLMNWYNKRIALVER 226