Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 221 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 84.3 bits (207), Expect = 3e-21
 Identities = 61/209 (29%), Positives = 113/209 (54%), Gaps = 7/209 (3%)

Query: 197 LIAGIIACWVLSIWATNRQRLTGQQTPMGRYILLLCVTFPVLVYFLLGQPITAEYPVLRG 256
           L+ G+    +LS+       + G    +GR      +  P+ V+++  Q       +L  
Sbjct: 15  LLGGLGVTLLLSVLTAIGALVLGTALGLGRVYGAAWLRIPI-VFYIDTQRAIPVLVILVW 73

Query: 257 FNFQ----GGISVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQTEAAMSLGLTRTK 312
           F F      GIS  P  AAL+ ALT++ A+++AEIVR+GI ++  GQ  AA++LG++R +
Sbjct: 74  FYFAVPILTGISFHPFWAALM-ALTLHIAAYVAEIVRAGIESIRPGQIRAALALGMSRAQ 132

Query: 313 TLKLVIIPQALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIIS 372
            ++ V++PQAL  ++P   S      K++++A  I  P+L+   A T   Q+ + IE+ +
Sbjct: 133 IVRKVVLPQALVRMLPAFGSVLSITIKDTAIATVIAVPELMK-RAETIAGQSYRPIEVFT 191

Query: 373 MTMLVYLTLSLLTSALMNLYNRKVALVER 401
           + M++Y  +    + L++   ++VA + R
Sbjct: 192 VVMVIYFIILFPGTRLIDALYKRVAHLGR 220



 Score = 37.4 bits (85), Expect = 4e-07
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 4/65 (6%)

Query: 93  LVGLLNTALVSVLGILLATILGFLIGIARL-SSNWLISRLAAV-YIETFRNLPLLLQIFF 150
           L GL  T L+SVL  + A +LG  +G+ R+  + WL  R+  V YI+T R +P+L+ + +
Sbjct: 16  LGGLGVTLLLSVLTAIGALVLGTALGLGRVYGAAWL--RIPIVFYIDTQRAIPVLVILVW 73

Query: 151 WYFVV 155
           +YF V
Sbjct: 74  FYFAV 78