Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4) from Variovorax sp. SCN45

 Score =  230 bits (587), Expect = 4e-65
 Identities = 138/365 (37%), Positives = 201/365 (55%), Gaps = 55/365 (15%)

Query: 34  LLAVCVLAFFLYTIVNNALTNLESRGIATGFAFLEQTAGFGISQSLIPYDETYSYGRTFL 93
           LL + V+A  ++ +V++AL  L +RG+ +GF FL + AGF IS+  + +D +  + R FL
Sbjct: 22  LLVLAVVAGAVW-VVHHALEVLRARGVRSGFDFLTEPAGFSISEGWLDFDASQPFWRAFL 80

Query: 94  VGLLNTALVSVLGILLATILGFLIGIARLSSNWLISRLAAVYIETFRNLPLLLQIFFWYF 153
            GL+NT   +V   + + +LG LIGI RL+ + L+  +   Y+E  RN+PLL+Q+    F
Sbjct: 81  AGLINTVRAAVPAAIFSVVLGTLIGIGRLAPHVLLRGICTAYVELLRNVPLLVQLLMLAF 140

Query: 154 VVLQALPSARESMHLGEWFYLNIKGLYLAKPIFESGSIWVLVALIAGIIACWVLSIWATN 213
            +   LP   E +HL    +L+  GL +  P+   G  W                     
Sbjct: 141 AMANLLPDPTEPVHLLPGVWLSKGGLSVPWPVAAEGGWW--------------------- 179

Query: 214 RQRLTGQQTPMGRYILLLCVTFPVLVYFLLGQPITAEYPVLRGFNFQGGISVLPELAALL 273
                                           P   E+P    F   GG ++ PE   ++
Sbjct: 180 --------------------------------PTHFEWPERGNFGVSGGAALSPEYVTIV 207

Query: 274 VALTIYTASFIAEIVRSGINAVSHGQTEAAMSLGLTRTKTLKLVIIPQALRIIIPPLTSQ 333
             LT Y+A+F+AEIVR+GI +VS GQ  A  +LGL+  + L++VI+PQALR+I+P LT+Q
Sbjct: 208 AGLTFYSAAFVAEIVRAGILSVSQGQVLAGQALGLSSGQQLRIVILPQALRVIVPSLTNQ 267

Query: 334 YLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIISMTMLVYLTLSLLTSALMNLYN 393
            L+LTKNSSLA+A+GYP+LVSV A TT+   G+A E I++ M VYL LSLL S  MN YN
Sbjct: 268 LLSLTKNSSLAVAVGYPELVSV-ANTTIGSNGRAFECIAIIMAVYLLLSLLISFGMNRYN 326

Query: 394 RKVAL 398
            +VAL
Sbjct: 327 ARVAL 331