Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 235 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 95.9 bits (237), Expect = 1e-24
 Identities = 66/195 (33%), Positives = 108/195 (55%), Gaps = 12/195 (6%)

Query: 190 SIWVLVALIAG--IIACWVLSIWATNRQRLTGQQTPMGRYILLLCVTFPVLV---YFLLG 244
           ++WV + + AG  ++  ++ +  +++R  L       G Y+ L   T P+LV   ++  G
Sbjct: 25  TLWVSLLVSAGATVLGVFIAAGRSSSRPALL---RATGAYVSLFRNT-PLLVQLFFWYFG 80

Query: 245 QPITAEYPVLRGFNFQGGISVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQTEAAM 304
            P      V R + + G +    EL + LV LT+Y A+++ E +RSGI  V  GQ  AA 
Sbjct: 81  APAVLPEAV-REWVYAGHVLSF-ELLSALVGLTLYAAAYVGEDIRSGIRGVPAGQALAAS 138

Query: 305 SLGLTRTKTLKLVIIPQALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQT 364
           +LG TR + +  V++PQALRI +PPL  QY+N+ KN+SLAMA+G  +L S  +     +T
Sbjct: 139 ALGFTRAQVMSQVVLPQALRIALPPLLGQYMNIVKNTSLAMAVGLVEL-SYASRQVEAET 197

Query: 365 GQAIEIISMTMLVYL 379
            +  +      L+Y+
Sbjct: 198 FKTFQAFGFATLLYI 212



 Score = 60.5 bits (145), Expect = 5e-14
 Identities = 35/81 (43%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 93  LVGLLNTALVSVLGILLATILGFLIGIARLSSNWLISRLAAVYIETFRNLPLLLQIFFWY 152
           L G L T  VS+L    AT+LG  I   R SS   + R    Y+  FRN PLL+Q+FFWY
Sbjct: 19  LDGWLTTLWVSLLVSAGATVLGVFIAAGRSSSRPALLRATGAYVSLFRNTPLLVQLFFWY 78

Query: 153 FVVLQALPSARESMHLGEWFY 173
           F     LP A     + EW Y
Sbjct: 79  FGAPAVLPEA-----VREWVY 94