Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 392 a.a., putative amino acid ABC transporter - permease subunit from Pseudomonas putida KT2440

 Score =  398 bits (1022), Expect = e-115
 Identities = 209/382 (54%), Positives = 276/382 (72%), Gaps = 4/382 (1%)

Query: 22  LYNPTFRSVVFQLLAVCVLAFFLYTIVNNALTNLESRGIATGFAFLEQTAGFGISQSLIP 81
           L +P  R+ +FQ+L +  +    + + +N  TNL+ RGI +GF FL+++AGFGI+Q LIP
Sbjct: 13  LNDPRVRAWLFQILTIVFVVGLGWYLFHNTQTNLQHRGITSGFDFLDRSAGFGIAQHLIP 72

Query: 82  YDETYSYGRTFLVGLLNTALVSVLGILLATILGFLIGIARLSSNWLISRLAAVYIETFRN 141
           Y E+ SY R F++GLLNT LV+ +G++LATILGF+IG+ARLS NW+I++LA VY+ETFRN
Sbjct: 73  YVESDSYARVFVIGLLNTLLVTFIGVILATILGFIIGVARLSPNWMINKLATVYVETFRN 132

Query: 142 LPLLLQIFFWYFVVLQALPSARESMHLGEWFYLNIKGLYLAKPIFESGSIWVLVALIAGI 201
           +P LLQI FWYF V   LP  R S+++ + F+++ +GL +       G    +VAL   I
Sbjct: 133 IPPLLQILFWYFAVFLTLPGPRGSINIEDMFFISNRGLNMPGASIADGFWPFVVALALAI 192

Query: 202 IACWVLSIWATNRQRLTGQQTPMGRYI--LLLCVTFPVLVYFLLGQPITAEYPVLRGFNF 259
            A  ++  +A  R   TG   P  ++   LLL +  P L   L G P+T + P L+GFNF
Sbjct: 193 AAIALMVRYANKRFNETG--VPFHKFWAGLLLFIAIPSLSVLLFGSPVTWDMPQLKGFNF 250

Query: 260 QGGISVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQTEAAMSLGLTRTKTLKLVII 319
            GG  ++PEL AL +ALTIYTA+FIAEIVRSGI +VSHGQTEAA SLGL    TL+ VII
Sbjct: 251 VGGWVLIPELLALTLALTIYTAAFIAEIVRSGIRSVSHGQTEAARSLGLREGPTLRKVII 310

Query: 320 PQALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIISMTMLVYL 379
           PQALR+IIPPLTSQYLNL KNSSLA  IGYP++VS+FAGT LNQTGQAIE+I++TM VYL
Sbjct: 311 PQALRVIIPPLTSQYLNLAKNSSLAAGIGYPEMVSLFAGTVLNQTGQAIEVIAITMSVYL 370

Query: 380 TLSLLTSALMNLYNRKVALVER 401
            +S+  S LMN YN+++AL+ER
Sbjct: 371 AISISISLLMNWYNKRIALIER 392