Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 222 a.a., predicted transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score = 84.0 bits (206), Expect = 4e-21
 Identities = 51/161 (31%), Positives = 97/161 (60%), Gaps = 8/161 (4%)

Query: 244 GQPITAEYPVLRGFNFQGGISVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQTEAA 303
           G P+ A+  ++     Q GI + P + + ++ L++ TA++ AE +R+ I+++  GQ EAA
Sbjct: 64  GTPLIAQLFMIYYGLPQFGIELDP-IPSAMIGLSLNTAAYAAETLRAAISSIDKGQWEAA 122

Query: 304 MSLGLTRTKTLKLVIIPQALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQ 363
            S+G+T  +T++  I+PQA R+ +PPL++ +++L K++SLA  I  P+L   F    L  
Sbjct: 123 ASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPEL---FRQAQL-I 178

Query: 364 TGQAIEIISMTM---LVYLTLSLLTSALMNLYNRKVALVER 401
           T + +E+ +M +   L+Y  ++ + S L N +  ++   ER
Sbjct: 179 TSRTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQER 219



 Score = 49.3 bits (116), Expect = 1e-10
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 93  LVGLLNTALVSVLGILLATILGFLIGIARLSSNWLISRLAAVYIETFRNLPLLLQIFFWY 152
           L G   T  +S+ G+    +LGF++ + RLS  W +  LA  YI  FR  PL+ Q+F  Y
Sbjct: 16  LKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYISIFRGTPLIAQLFMIY 75

Query: 153 F------VVLQALPSARESMHLGEWFY 173
           +      + L  +PSA   + L    Y
Sbjct: 76  YGLPQFGIELDPIPSAMIGLSLNTAAY 102