Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family from Enterobacter asburiae PDN3

 Score =  400 bits (1027), Expect = e-116
 Identities = 213/382 (55%), Positives = 279/382 (73%), Gaps = 8/382 (2%)

Query: 24  NPTFRSVVFQLLAVCVLAFFLYTIVNNALTNLESRGIATGFAFLEQTAGFGISQSLIPYD 83
           +P  R+ +FQ++A+  +      +++N +TNL +RGI +GFAFL+++AGFGI Q LI Y 
Sbjct: 16  HPAVRAWLFQIIAIVAVVLIAVYLIHNTITNLNNRGITSGFAFLDRSAGFGIVQHLIDYQ 75

Query: 84  ETYSYGRTFLVGLLNTALVSVLGILLATILGFLIGIARLSSNWLISRLAAVYIETFRNLP 143
           E  +YGR F+VGLLNT LVS L I+ A++LGF IG+ARLS NWL+ +L+ VYIETFRN+P
Sbjct: 76  EGDTYGRVFVVGLLNTLLVSALCIVFASVLGFFIGLARLSENWLLRKLSTVYIETFRNIP 135

Query: 144 LLLQIFFWYFVVLQALPSARESMHLGEWFYLNIKGLYLAKPIFESGSIWVLVALIAGIIA 203
            LLQIFFWYF VL+ LP  R+++   E F+L+ +GL +  P    G    L A I  I+ 
Sbjct: 136 PLLQIFFWYFAVLRNLPGPRQAVDAFELFFLSNRGLSIPSPQPGEG----LYAFIGAIVI 191

Query: 204 CWVLS--IWATNR--QRLTGQQTPMGRYILLLCVTFPVLVYFLLGQPITAEYPVLRGFNF 259
              LS  ++  NR  Q  TGQ         +L V+ P++ ++L G  +  + P LRGFNF
Sbjct: 192 ALALSAGVFRFNRKHQIKTGQLRRTWPTAAVLIVSLPLIAHWLFGAALHWDIPHLRGFNF 251

Query: 260 QGGISVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQTEAAMSLGLTRTKTLKLVII 319
           QGG+ ++PELAAL +AL+IYT++FIAEI+R+GI AV +GQ EAA SLGL  T TL+ VII
Sbjct: 252 QGGMVLIPELAALTLALSIYTSAFIAEIIRAGIQAVPYGQHEAARSLGLPHTVTLRQVII 311

Query: 320 PQALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIISMTMLVYL 379
           PQALR+IIPPLTSQYLN+ KNSSLA AIGYPD+VS+FAGT LNQTGQAIE I++TM VYL
Sbjct: 312 PQALRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAIETIAITMSVYL 371

Query: 380 TLSLLTSALMNLYNRKVALVER 401
            +SL+ S LMNLYNR++ALVER
Sbjct: 372 IISLVISLLMNLYNRRIALVER 393