Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., ABC transporter, membrane spanning protein (amino acid) from Agrobacterium fabrum C58

 Score =  392 bits (1007), Expect = e-114
 Identities = 199/397 (50%), Positives = 277/397 (69%), Gaps = 2/397 (0%)

Query: 5   NKATPETSDAHSKHTNLLYNPTFRSVVFQLLAVCVLAFFLYTIVNNALTNLESRGIATGF 64
           N  + + S A S  ++L+Y+P  R + +Q+L V +L  F++ IV N +TNL+   I++GF
Sbjct: 4   NAVSSQRSRAQSA-SSLIYDPRIRGIFYQVLTVVILTAFVWVIVTNTITNLQRSNISSGF 62

Query: 65  AFLEQTAGFGISQSLIPYDETYSYGRTFLVGLLNTALVSVLGILLATILGFLIGIARLSS 124
            FL+  AGF I QSLI Y    +YGR  +VG+LNT  V+  GI+ A+I+GF++GIARLS+
Sbjct: 63  GFLDGRAGFDIGQSLIAYTSDSTYGRALIVGILNTIQVAFFGIIAASIIGFIVGIARLSN 122

Query: 125 NWLISRLAAVYIETFRNLPLLLQIFFWYFVVLQALPSARESMHLGEWFYLNIKGLYLAKP 184
           NWLIS+LA  Y+E FRN+P LL IFFWY  V+  LP AR+S+ L    YLN +G +  KP
Sbjct: 123 NWLISKLAQAYVEIFRNIPPLLVIFFWYKGVISVLPQARDSLELPLGSYLNNRGFFFPKP 182

Query: 185 IFESGSIWVLVALIAGIIACWVLSIWATNRQRLTGQQTPMGRYILLLCVTFPVLVYFLLG 244
           ++  G+  + +A +  I+  + +  WA  RQ  TGQQ   G    LL +  P   +  LG
Sbjct: 183 LWGEGTWLIPLAFLVAIVISFFVYRWAKARQEQTGQQFRTGITAALLIIGLPAATFLALG 242

Query: 245 QPITAEYPVLRGFNFQGGISVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQTEAAM 304
            P+T +YP+   FN  GG  V PE  +L +AL+ YTASFIAEIVR GI AV+ GQTEAA 
Sbjct: 243 SPLTFDYPIAGRFNLSGGSVVAPEFMSLFLALSFYTASFIAEIVRGGIKAVAKGQTEAAD 302

Query: 305 SLGLTRTKTLKLVIIPQALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQT 364
           +LGL  + T +L+++PQA+RIIIPPLTSQ+LNLTKNSSLA+A+G+ D+VSV  GT LNQT
Sbjct: 303 ALGLRSSTTTRLIVVPQAMRIIIPPLTSQFLNLTKNSSLAVAVGFADIVSV-GGTILNQT 361

Query: 365 GQAIEIISMTMLVYLTLSLLTSALMNLYNRKVALVER 401
           GQA+E++++ +++YL+LSLLT+ +MN +N K+ALVER
Sbjct: 362 GQAVEVVAIWLVIYLSLSLLTALVMNWFNAKMALVER 398