Pairwise Alignments

Query, 365 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 262 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  108 bits (269), Expect = 2e-28
 Identities = 68/212 (32%), Positives = 112/212 (52%), Gaps = 10/212 (4%)

Query: 157 GLLVTLIIALVGIIASLPIGVALALGRRSDMPIIRSLCTVYIEVWRGVPLITVLFMASVM 216
           G   T+ + LV  +A +  GV  ALG+ S     R L + YI V RG PL+  +    + 
Sbjct: 57  GTRTTVRLTLVSGLAGILFGVLAALGKLSAFKPARWLASFYIWVIRGTPLLVQILFVFLA 116

Query: 217 LPLFLSQGSEIDKLLRALIGVVMFSAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKMG 276
           LP+ +    ++D    A + +   + AY AE IR GL A+P+GQ EA+ +LGLS      
Sbjct: 117 LPVLIP-ALQLDDFTSACVALAFNAGAYNAESIRAGLLAVPRGQTEASRSLGLSRGYTFF 175

Query: 277 LIILPQALKITIPSIVNTFIGLFKDTSLVLIIGMFDVLGIG---QSANTDPNWLGFATES 333
            ++LPQA K+++P +VN FI L KD+SL   IG+ ++  +G   Q+A   P        +
Sbjct: 176 DVVLPQAFKVSLPPLVNNFISLLKDSSLAYAIGVVELTNVGNRMQAATFQP------LPA 229

Query: 334 YVFVALVFWIFCFGMSRYSIWLEGKLHTGHKR 365
              +A+++ +    +++ S  +E +L    +R
Sbjct: 230 LATIAVIYLLLTTALTQISNAVENRLDVEGRR 261