Pairwise Alignments

Query, 365 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 218 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  112 bits (280), Expect = 9e-30
 Identities = 61/204 (29%), Positives = 116/204 (56%), Gaps = 6/204 (2%)

Query: 161 TLIIALVGIIASLPIGVALALGRRSDMPIIRSLCTVYIEVWRGVPLITVLFMASVMLPLF 220
           TL+++ +  +     G  L L R S  P +R    VYIE  +G+PL+ +LF+    L ++
Sbjct: 21  TLVLSAIAFVLGAVGGFGLMLARISPRPWLRWFAVVYIECIQGIPLLILLFIVYFGLSVY 80

Query: 221 LSQGSEIDKLLRALIGVVMFSAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKMGLIIL 280
              G  +  L+ A + ++++ +AY+ ++ RG ++A+PK Q+EA++ L LS W+ + L+I+
Sbjct: 81  ---GLSLPSLVAAGLAMMIYVSAYLGDIWRGCIEAMPKPQWEASECLALSRWQTLRLVII 137

Query: 281 PQALKITIPSIVNTFIGLFKDTSLVLIIGMFDVLGIGQSANTDPNWLGFATESYVFVALV 340
           PQA+++++P  V   + + K TSL  +IG  ++   GQ  N   N +      +  V   
Sbjct: 138 PQAVRLSLPPTVGFLVQIIKMTSLASVIGFVELTRAGQIIN---NTIFQPFLVFFLVGAF 194

Query: 341 FWIFCFGMSRYSIWLEGKLHTGHK 364
           ++  C+ +SR+S  +E KL+  ++
Sbjct: 195 YFALCYPLSRWSEAMEKKLNVANR 218