Pairwise Alignments

Query, 365 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 351 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  283 bits (723), Expect = 6e-81
 Identities = 143/347 (41%), Positives = 220/347 (63%), Gaps = 11/347 (3%)

Query: 18  GVVGWLRKNLFNGVFNSIATLVLGYLAIQGLLNILDWAIFNANWSGTTRNDCTLE-GACW 76
           G + W R  L+     ++AT++L  L   G  ++++W + +A +         ++ GACW
Sbjct: 7   GPIAW-RSELWGSPLRALATVLLLALLAWGGFHVVEWGVVHAVFRPDAEACRAVQHGACW 65

Query: 77  VFISVRWEQFMYGFYPAAELWRPRLFFFTLALFVALLAYEKTPKRGWI---WLVFVNIYP 133
             ++ +W   ++G +P  E WRP +    L+    L A+ ++  R W+   W+V + ++ 
Sbjct: 66  GVVAEKWRPMLFGRFPYEEQWRPAVAVVVLSAVTVLSAWPRS-WRWWLAPLWIVALLLF- 123

Query: 134 FFAALLLYGGVFGLEVVETHKWGGLLVTLIIALVGIIASLPIGVALALGRRSDMPIIRSL 193
               LL+ GGV GL  V T +WGGL +T+ +A+VG+  + P+ + LALGRRS  P++R+L
Sbjct: 124 ---VLLMRGGVLGLSGVPTSRWGGLPLTIGLAVVGLALAFPLALLLALGRRSGWPVVRTL 180

Query: 194 CTVYIEVWRGVPLITVLFMASVMLPLFLSQGSEIDKLLRALIGVVMFSAAYMAEVIRGGL 253
              YIE+ RGVPLI+VLFMAS +LPL    G + D L+R L G+ +F AAY+AE+IRGGL
Sbjct: 181 SASYIELVRGVPLISVLFMASFLLPLLWPAGWQPDVLVRVLAGLTLFVAAYLAEIIRGGL 240

Query: 254 QAIPKGQYEAADALGLSYWKKMGLIILPQALKITIPSIVNTFIGLFKDTSLVLIIGMFDV 313
           QA+P+GQ E A ALG   W     I+LPQAL++ +P++ N+ +G  KDTSLV ++G+F++
Sbjct: 241 QAVPRGQTEVAMALGFGRWPVQRDIVLPQALRLVVPALTNSVVGTLKDTSLVTVVGLFEL 300

Query: 314 LG-IGQSANTDPNWLGFATESYVFVALVFWIFCFGMSRYSIWLEGKL 359
            G +G +   DP W  F  E Y+F+A V+W+ CFG+SRYS+WLE +L
Sbjct: 301 TGALGLALGGDPTWRPFYLEGYLFIAAVYWVLCFGLSRYSVWLEKRL 347