Pairwise Alignments

Query, 365 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., putative transport system permease protein (VIMSS) from Escherichia coli BW25113

 Score =  410 bits (1053), Expect = e-119
 Identities = 199/355 (56%), Positives = 255/355 (71%)

Query: 8   PSLPPPSNTTGVVGWLRKNLFNGVFNSIATLVLGYLAIQGLLNILDWAIFNANWSGTTRN 67
           P  P   N++  + W+RKNLF+   NS+ T+   +L  + +  +L+WA   ANW G+TR 
Sbjct: 9   PPRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQANWVGSTRA 68

Query: 68  DCTLEGACWVFISVRWEQFMYGFYPAAELWRPRLFFFTLALFVALLAYEKTPKRGWIWLV 127
           DCT  GACWVFI  R+ QFMYG YP  + WR  L      + +A + ++  P RG     
Sbjct: 69  DCTKAGACWVFIHERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILPHRGRYIAA 128

Query: 128 FVNIYPFFAALLLYGGVFGLEVVETHKWGGLLVTLIIALVGIIASLPIGVALALGRRSDM 187
           +  IYP     L+YGG F LE VET +WGGL +TLIIA VGI  +LP G+ LALGRRS M
Sbjct: 129 WAVIYPLIVWWLMYGGFFALERVETRQWGGLTLTLIIASVGIAGALPWGILLALGRRSHM 188

Query: 188 PIIRSLCTVYIEVWRGVPLITVLFMASVMLPLFLSQGSEIDKLLRALIGVVMFSAAYMAE 247
           PI+R L  ++IE WRGVPLITVLFM+SVMLPLF+++G+ IDKL+RAL+GV++F +AY+AE
Sbjct: 189 PIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVILFQSAYVAE 248

Query: 248 VIRGGLQAIPKGQYEAADALGLSYWKKMGLIILPQALKITIPSIVNTFIGLFKDTSLVLI 307
           V+RGGLQA+PKGQYEAA++L L YWK  GL+ILPQALK+ IP +VNT I LFKDTSLV+I
Sbjct: 249 VVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALFKDTSLVII 308

Query: 308 IGMFDVLGIGQSANTDPNWLGFATESYVFVALVFWIFCFGMSRYSIWLEGKLHTG 362
           IG+FD+    Q A  DP WLG +TE YVF AL++WIFCF MSRYS +LE + +TG
Sbjct: 309 IGLFDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQYLEKRFNTG 363