Pairwise Alignments

Query, 365 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., ABC transporter, membrane spanning protein (amino acid) from Agrobacterium fabrum C58

 Score =  380 bits (975), Expect = e-110
 Identities = 198/368 (53%), Positives = 242/368 (65%), Gaps = 13/368 (3%)

Query: 11  PPPSNTTGVVGWLRKNLFNGVFNSIATLVLGYLAIQGLLNILDWAIFNANWSGTTRNDCT 70
           P PS+  G   WLR  LF    +++ T++   L    +  I+ W   +A W+G+ R  C 
Sbjct: 18  PAPSSAVGFGHWLRTKLFATPKDTVLTVIALALLAYLVPPIIKWLFIDAVWTGSDRFACL 77

Query: 71  L-----------EGACWVFISVRWEQFMYGFYPAAELWRPRLFFFTLALFVALLAYEKTP 119
                        GACW F+S +  QF++G YP  E WRP L   T A+ +  +   K P
Sbjct: 78  TVSQGGALPDGQSGACWAFVSAKLGQFVFGRYPIDERWRPILVMVTFAILLVPMLIPKAP 137

Query: 120 KRGWIWLVFVNIYPFFAALLLYGGVFGLEVVETHKWGGLLVTLIIALVGIIASLPIGVAL 179
            +    L    I PF A  LL GGVFGL  VET  WGGL+VTLI++  GI  SLP G+ L
Sbjct: 138 FKRLNALALFIILPFIAFFLLIGGVFGLPKVETQLWGGLMVTLILSFFGITVSLPFGILL 197

Query: 180 ALGRRSDMPIIRSLCTVYIEVWRGVPLITVLFMASVMLPLFLSQGSEIDKLLRALIGVVM 239
           ALGRRS++P+I+ LC ++IEV RG+PLITVLF AS+MLPLFL  G   DK LRAL+GV +
Sbjct: 198 ALGRRSNLPVIKMLCVLFIEVIRGIPLITVLFFASIMLPLFLPDGWTFDKFLRALVGVSL 257

Query: 240 FSAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKMGLIILPQALKITIPSIVNTFIGLF 299
           FS+AYMAEVIRGGLQAIPKGQYE AD+LGL+YW+K  LI+LPQALK+ IP IVNTFIGLF
Sbjct: 258 FSSAYMAEVIRGGLQAIPKGQYEGADSLGLNYWQKTRLIVLPQALKLVIPGIVNTFIGLF 317

Query: 300 KDTSLVLIIGMFDVLGIGQSANTDPNWLG--FATESYVFVALVFWIFCFGMSRYSIWLEG 357
           KDTSLV IIGMFD+LGI      D NW     A   Y+F   VFWIFCFGMSRYS+++E 
Sbjct: 318 KDTSLVSIIGMFDLLGIVTLNQADANWATPVTAMTGYIFAGFVFWIFCFGMSRYSLFMER 377

Query: 358 KLHTGHKR 365
            L TGHKR
Sbjct: 378 HLDTGHKR 385