Pairwise Alignments

Query, 397 a.a., ribosomal RNA large subunit methyltransferase I from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) from Variovorax sp. SCN45

 Score =  320 bits (819), Expect = 6e-92
 Identities = 186/398 (46%), Positives = 248/398 (62%), Gaps = 20/398 (5%)

Query: 7   LVKGRDKSLRRKHPWVFSRGISKVEGTPKLGETVDVYSFEGKWLAKAAYSPHSQITARVW 66
           L  G+++S++R+HPWVF   I++  G    GETV V S +G +LA AA+SP S+I AR W
Sbjct: 6   LKPGKERSMQRRHPWVFESAIAR--GGADSGETVRVESHDGAFLAWAAFSPASKIRARAW 63

Query: 67  SF-EQEPIDRDFFIKRIEQAQLLRNDI-IERDGLTGYRLIAAESDGLPGITIDKYQDYLV 124
           SF E + ID  F      +A   R    ++ DG+   R++  E+DGLPG+ +D+Y D LV
Sbjct: 64  SFVETQRIDAAFLASVCARAVAARGLFDLQSDGV---RVVHGEADGLPGLIVDRYGDTLV 120

Query: 125 CQLLSAGAEYQKQTLVEALLHCFPECHIYERSDVAVRKKEGLDERVGVLHGELPPKSVVI 184
            Q LSAG E  K  L +ALL       +YERSD + R++EGL    G L G+  P  +VI
Sbjct: 121 AQFLSAGVERWKDVLADALLKATGLAKLYERSDASGREREGLKPVTGWLRGD-GPTEIVI 179

Query: 185 EENGVKISVDIVGGHKTGFYLDQRDSRFQSMKYVKEKE---VLNCFSYTGGFGLYALKG- 240
            E+G K+S+DI  GHKTGFYLDQRDSR +  +  + +    VLNCF YTGGF + AL G 
Sbjct: 180 REHGWKLSLDIATGHKTGFYLDQRDSRQRFAELAQHRRFRRVLNCFCYTGGFTVAALAGL 239

Query: 241 -------GAKRVINADVSQPALDTAKFNAELNGFDISKKRAVFLNADVFKLLREYRDQGT 293
                  GA+ +++ D S PAL+ A+ +  LNGF+     A FL+A+V  +LRE+ DQG 
Sbjct: 240 KAANALQGAQ-LVSVDSSLPALERARGHLALNGFEGQGIEAEFLDANVNTVLREFIDQGR 298

Query: 294 RFDVVVMDPPKFAESKAQLDGACRGYKDINMLAMQILNPGGTLLTYSCSGLMDQVLFQKI 353
            FD +V+DPPKFA + A  + A R YKDIN LA+++L PGG LLT+SCSG +   LF KI
Sbjct: 299 TFDAIVLDPPKFAPTAAHAERAARAYKDINRLALKLLEPGGVLLTFSCSGGISADLFHKI 358

Query: 354 IADAALDAGRDVKFVERFEQAADHPTDTAYPEGFYLKG 391
           +A A +DAG D    ER   A DHP    +PEG YLKG
Sbjct: 359 VASAGIDAGVDGYIAERLGAAPDHPMTIEFPEGEYLKG 396