Pairwise Alignments

Query, 397 a.a., ribosomal RNA large subunit methyltransferase I from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., ribosomal RNA large subunit methyltransferase I from Pseudomonas putida KT2440

 Score =  223 bits (569), Expect = 6e-63
 Identities = 143/400 (35%), Positives = 212/400 (53%), Gaps = 13/400 (3%)

Query: 3   PAIYLVKGRDKSLRRKHPWVFSRGISKVEGTP----KLGETVDVYSFEGKWLAKAAYSPH 58
           P++ L    D+ LR  H WV+S  +  V  TP    + G+   + +  GK L   A SP+
Sbjct: 4   PSLRLKANADRRLRAGHLWVYSNEVD-VSATPLQGFQAGQQAILEAANGKPLGIVALSPN 62

Query: 59  SQITARVWSFEQE-PIDRDFFIKRIEQAQLLRNDIIERDGLTGYRLIAAESDGLPGITID 117
           + I AR+ S + + P+D+   + R+  A  LR  + E+     YRL+  +SD LPG+ +D
Sbjct: 63  NLICARLLSRDIKLPLDKSLLVHRLNVALSLRERLFEQPC---YRLVYGDSDLLPGLVVD 119

Query: 118 KYQDYLVCQLLSAGAEYQKQTLVEALLHCFPECHIYERSDVAVRKKEGLDERVGVLHGEL 177
           ++ D LV QL SA  E  K  ++ AL+       I  ++D A R  EGL   V  ++GE+
Sbjct: 120 RFFDILVVQLASATMEAHKDDVIAALVQVLKPSGILFKNDSAARDAEGLQRYVETVYGEV 179

Query: 178 PPKSVVIEENGVKISVDIVGGHKTGFYLDQRDSRFQSMKYVKEKEVLNCFSYTGGFGLYA 237
           P   V +EENGVK    +  G KTG++ D R +R +   YVK K VL+ FSY GG+G+ A
Sbjct: 180 PDW-VPLEENGVKFEAPVREGQKTGWFYDHRMNRARLAPYVKGKRVLDLFSYIGGWGVQA 238

Query: 238 LKGGAKRVINADVSQPALDTAKFNAELNGFDISKKRAVFLNADVFKLLREYRDQGTRFDV 297
              GA  V   D S  ALD  + NA LNG     ++   +  DVF+ LRE +    RFDV
Sbjct: 239 GAFGASEVFCVDASGFALDGVERNAALNGIS---EKLTCIEGDVFEALRELKAAEERFDV 295

Query: 298 VVMDPPKFAESKAQLDGACRGYKDINMLAMQILNPGGTLLTYSCSGLMDQVLFQKIIADA 357
           ++ DPP F + K  L      Y+ +N  AM++LN  G L++ SCS  + +     I+  +
Sbjct: 296 IIADPPAFIKRKKDLKNGEAAYRRLNEQAMRMLNKDGILVSASCSMHLPEDDLNNILLTS 355

Query: 358 ALDAGRDVKFVERFEQAADHPTDTAYPEGFYLKGFACKVL 397
           A    R+++ +ER  Q  DHP   A  E  Y+K   C++L
Sbjct: 356 ARHLDRNMQLLERGGQGPDHPVHPAIAETRYIKSITCRLL 395