Pairwise Alignments
Query, 976 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1357 a.a., hypothetical protein from Magnetospirillum magneticum AMB-1
Score = 127 bits (319), Expect = 5e-33
Identities = 191/826 (23%), Positives = 321/826 (38%), Gaps = 92/826 (11%)
Query: 42 TSTDGLPHNSINSIAQTRDGYLWFATWEGVVRYNGINFQVF--DRNPQTGMVDSGTRTLL 99
T DGLP+ +AQ R G++W AT G R++G VF D N + ++ L
Sbjct: 65 TPADGLPYPVALGVAQDRHGFIWAATPGGAARWDGYRMTVFRHDSNDPKSLPENIVTNAL 124
Query: 100 PMDNNGLLVAGARGSITHRQS--YGWQSFRSAPSLVNG---ALIDDAQNLWLAIEGLGVV 154
++ + + A G I G+ +FR + G A+ D + G+ V
Sbjct: 125 TDEHGQVWLGTASGLIVRYDDNVQGFTTFRDDRGVGLGRPNAMAGDGRG------GIWVA 178
Query: 155 VRPYLGNNLYGPDRWL----LTDASVYRLVKNQHGVIFAATDKGLYRFNDWQASAMELPI 210
R L W + V ++ ++ G ++A T GL R + + S L +
Sbjct: 179 SRLALARLDVATKVWRRETGIPAGDVGSVMVDRSGRLWAGTVAGLMRQREDRQSFEPLTM 238
Query: 211 GRYERINYISISLNQELVVATDQGVWINTEEGFQSLFVP---LEKEV--------VTLAE 259
+ +S + D +W T G +P +E E VT
Sbjct: 239 PGETTKDMVSA-----IFEGHDGTIWFGTRRGRVGKVLPNGEVELEAALPPSGHRVTAFA 293
Query: 260 QDRAGNWWIGTVNRGIARLKNQQLQFL----EPS--RGLPYSRVLSWYQDIEGSVWVGTN 313
+ R G W+G GI L+ +P+ GL + V D G VWV T
Sbjct: 294 EPRPGILWVGQYGGGIYELRAASHMIRSFTHDPAIATGLGDNSVTGLLVDRSGLVWVSTL 353
Query: 314 AGIMRL--RDAPFININSDK--GLVGDYVRTLLPLDDRRVMVGT-SRGLSIIEEGLAHSA 368
G+ R + + + +DK GL G VR++ D + +G + GL++++
Sbjct: 354 RGVHRHIPGNDSILTLVADKHGGLPGPDVRSVAASADGAMWLGLRAEGLALVDRTANVIR 413
Query: 369 LMPQVGARPSIL----SLAKADQQGEKVWVGTVQKGLLLWQNGQLRPVLDENNGLPSSEV 424
+P G +P L + A A+ VW G L++ L S +
Sbjct: 414 TIPS-GGQPDELPPGANQAIAETADGMVWAGQFSG---LFRIDTASGKAGRYEPLDGSNI 469
Query: 425 RAIVTDPQDNLWIGTSNGIVKRTPQG-----VLTTYNKDNSPLPDDYIMALAVDSEGKLW 479
A+ + +D+LW G S G+ + P + ++ + L D+ L DS G+LW
Sbjct: 470 LALRPE-RDHLWAGGSMGLARIDPGSTELPKIFHFDGENRASLSDNSAQTLFRDSAGRLW 528
Query: 480 VGSAVGVAYFDAQ--GKIR-----PVDLTKQEQAQYVFGFYMES-DYVWMATDRGIVRY- 530
VG+ G+ + + G+ R P D + + V G + +W+AT GI +
Sbjct: 529 VGTWKGLNLLEDEEIGRFRRFLNDPED-PESLPSDIVNGICEDRRGRIWVATANGIGVFD 587
Query: 531 --RLSDASVSLVGRAAGLPIDKFFQMLRDSEGHVWLSSNRGVWKLNYDQMLAVADGMSTQ 588
+ + +GR GLP ++ +G + + G+ ++ + G +
Sbjct: 588 PQQPGKTRFTRLGRHHGLPSGTVLSVIAREDGGIVAGTGDGLSLVDQETFTVRTFGPA-- 645
Query: 589 LEFEHFDEGDGMATSQANGGTNPASASLPNGELLFATAKGVASIKVQRLQQLS--ELRLP 646
EG + T A T A +L G G + + R L+ R P
Sbjct: 646 -------EGMHVRTFWAGSATRLADGTLGLG--------GFGGLAMLRPGPLAGWNFRPP 690
Query: 647 VVLESVSFDSEIINPDQQYIAAAGTNRVSFGYVGLGFVMSERLQYRTKLEGFDRDWSY-R 705
V++ + +++ P + + L F E +Y +L G D +W++
Sbjct: 691 VMVTELRIGGQVVPPTDNIVVRPEEGGFQVDFSALDFSAPESNRYAYRLVGNDAEWAHVD 750
Query: 706 GHNTQAEYTNLAPGKYRFFVSARYPYGEWNDATFSYVFIIEPHWWQRKEVIVMAGMLFLA 765
H+ A YT+L PG +R + A G WND S I P W Q V+A LA
Sbjct: 751 AHHRTAGYTHLPPGSFRLELRASNSAGVWNDPPTSLNVRILPEWHQTLWFRVLASAAVLA 810
Query: 766 LAVSLVMWRIRILKRRELYLVEQVALQTQKLRLQAEKFERLSKEDD 811
+ R RRE YL +Q+A +T + +A K L+ E++
Sbjct: 811 TLFAAERARRAYHWRREQYLNDQIATKTAE--AEAAKMWALAGEEE 854
Score = 57.0 bits (136), Expect = 8e-12
Identities = 113/501 (22%), Positives = 191/501 (38%), Gaps = 95/501 (18%)
Query: 35 DYFVETWTSTDGLPHNSINSIAQTRDGYLWFATWEGVVRYNGINFQVFDRNPQTGMVDSG 94
D + W G+P + S+ R G LW T G++R Q DR + G
Sbjct: 187 DVATKVWRRETGIPAGDVGSVMVDRSGRLWAGTVAGLMR------QREDRQSFEPLTMPG 240
Query: 95 TRTLLPMDNNGLLVAGARGSITHRQSYGWQSFRSAPSLVNGALIDDAQ------------ 142
T D + G G+I +G + R L NG + +A
Sbjct: 241 ETT---KDMVSAIFEGHDGTIW----FGTRRGRVGKVLPNGEVELEAALPPSGHRVTAFA 293
Query: 143 -----NLWLAIEGLGV--------VVRPYLGNNLYGPDRWLLTDASVYRLVKNQHGVIFA 189
LW+ G G+ ++R + + L D SV L+ ++ G+++
Sbjct: 294 EPRPGILWVGQYGGGIYELRAASHMIRSFTHDPAIATG---LGDNSVTGLLVDRSGLVWV 350
Query: 190 ATDKGLYRFNDWQASAMELPIGRYERINYISISLNQELVVATDQGVWINTE-EGFQSLFV 248
+T +G++R S + L ++ + + + + + D +W+ EG
Sbjct: 351 STLRGVHRHIPGNDSILTLVADKHGGLPGPDV---RSVAASADGAMWLGLRAEG------ 401
Query: 249 PLEKEVVTLAEQDRAGNWWIGTVNRGIARLKNQQLQFLEPSRGLPYSRVLSWYQDIEGSV 308
LA DR N I T+ G +P LP + + +G V
Sbjct: 402 --------LALVDRTAN-VIRTIPSG-----------GQPDE-LPPGANQAIAETADGMV 440
Query: 309 WVGTNAGIMRLRDAPFININSDKGLVGDYVRTLLPLDDRRVMVGTSRGLSIIEEGLAHSA 368
W G +G+ R+ D + L G + L P D + G S GL+ I+ G S
Sbjct: 441 WAGQFSGLFRI-DTASGKAGRYEPLDGSNILALRPERD-HLWAGGSMGLARIDPG---ST 495
Query: 369 LMPQV----GARPSILSLAKAD----QQGEKVWVGTVQKGLLLWQN---GQLRPVL---D 414
+P++ G + LS A ++WVGT KGL L ++ G+ R L +
Sbjct: 496 ELPKIFHFDGENRASLSDNSAQTLFRDSAGRLWVGT-WKGLNLLEDEEIGRFRRFLNDPE 554
Query: 415 ENNGLPSSEVRAIVTDPQDNLWIGTSNGIVKRTPQ---GVLTTYNKDNSPLPDDYIMALA 471
+ LPS V I D + +W+ T+NGI PQ T + LP ++++
Sbjct: 555 DPESLPSDIVNGICEDRRGRIWVATANGIGVFDPQQPGKTRFTRLGRHHGLPSGTVLSVI 614
Query: 472 VDSEGKLWVGSAVGVAYFDAQ 492
+G + G+ G++ D +
Sbjct: 615 AREDGGIVAGTGDGLSLVDQE 635
Score = 55.8 bits (133), Expect = 2e-11
Identities = 77/306 (25%), Positives = 123/306 (40%), Gaps = 34/306 (11%)
Query: 286 LEPSRGLPYSRVLSWYQDIEGSVWVGTNAGIMR---LRDAPFININSD-KGLVGDYVRTL 341
L P+ GLPY L QD G +W T G R R F + ++D K L + V
Sbjct: 64 LTPADGLPYPVALGVAQDRHGFIWAATPGGAARWDGYRMTVFRHDSNDPKSLPENIVTNA 123
Query: 342 LPLDDRRVMVGTSRGLSI----IEEGLAHSALMPQVG-ARPSILSLAKADQQGEKVWVGT 396
L + +V +GT+ GL + +G VG RP+ ++ D +G +WV +
Sbjct: 124 LTDEHGQVWLGTASGLIVRYDDNVQGFTTFRDDRGVGLGRPNAMA---GDGRG-GIWVAS 179
Query: 397 VQKGLLLWQNGQLRPVLDENNGLPSSEVRAIVTDPQDNLWIGTSNGIVKRTPQGVLTTYN 456
L L + V G+P+ +V +++ D LW GT G++++
Sbjct: 180 ---RLALARLDVATKVWRRETGIPAGDVGSVMVDRSGRLWAGTVAGLMRQREDRQSFEPL 236
Query: 457 KDNSPLPDDYIMALAVDSEGKLWVGSAVGVAYFDAQGKIRPVDLTKQEQAQYVFGFYMES 516
D + A+ +G +W G+ G GK+ P + E A G + +
Sbjct: 237 TMPGETTKDMVSAIFEGHDGTIWFGTRRG-----RVGKVLPNGEVELEAALPPSGHRVTA 291
Query: 517 ------DYVWMATDRGIVRYRLSDASVSL------VGRAAGLPIDKFFQMLRDSEGHVWL 564
+W+ G + Y L AS + A GL + +L D G VW+
Sbjct: 292 FAEPRPGILWVGQYGGGI-YELRAASHMIRSFTHDPAIATGLGDNSVTGLLVDRSGLVWV 350
Query: 565 SSNRGV 570
S+ RGV
Sbjct: 351 STLRGV 356
Score = 49.3 bits (116), Expect = 2e-09
Identities = 76/356 (21%), Positives = 128/356 (35%), Gaps = 63/356 (17%)
Query: 32 HISDYFVETWTSTDGLPHNSINSIAQTRDGYLWFATWEGVVRYNGINFQVFDRNPQTGMV 91
H+ F GL NS+ + R G +W +T GV R+ N +
Sbjct: 317 HMIRSFTHDPAIATGLGDNSVTGLLVDRSGLVWVSTLRGVHRHIPGNDSIL--------- 367
Query: 92 DSGTRTLLPMDNNGLLVAGARGSITHRQSYGWQSFRSAPSLVNGALIDDAQNLWLAIEGL 151
TL+ + GL R W R+ AL+D N+ I
Sbjct: 368 -----TLVADKHGGLPGPDVRSVAASADGAMWLGLRAE----GLALVDRTANVIRTIPSG 418
Query: 152 GVVVRPYLGNNLYGPDRWLLTDASVYRLVKNQHGVIFAATDKGLYRFNDWQASAMELPIG 211
G PD L + + + G+++A GL+R + A G
Sbjct: 419 G------------QPDE--LPPGANQAIAETADGMVWAGQFSGLFRIDTASGKA-----G 459
Query: 212 RYERI---NYISISLNQELVVATDQGVWINTEEGFQSL----------FVPLEKEVVTLA 258
RYE + N +++ ++ + A + G L L
Sbjct: 460 RYEPLDGSNILALRPERDHLWAGGSMGLARIDPGSTELPKIFHFDGENRASLSDNSAQTL 519
Query: 259 EQDRAGNWWIGTVNRGIARLKNQQL----QFL---EPSRGLPYSRVLSWYQDIEGSVWVG 311
+D AG W+GT +G+ L+++++ +FL E LP V +D G +WV
Sbjct: 520 FRDSAGRLWVGTW-KGLNLLEDEEIGRFRRFLNDPEDPESLPSDIVNGICEDRRGRIWVA 578
Query: 312 TNAGI-----MRLRDAPFININSDKGLVGDYVRTLLPLDDRRVMVGTSRGLSIIEE 362
T GI + F + GL V +++ +D ++ GT GLS++++
Sbjct: 579 TANGIGVFDPQQPGKTRFTRLGRHHGLPSGTVLSVIAREDGGIVAGTGDGLSLVDQ 634