Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

 Score =  313 bits (801), Expect = 6e-89
 Identities = 228/671 (33%), Positives = 339/671 (50%), Gaps = 50/671 (7%)

Query: 592  ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
            EL  A++ A   S+ K +FLANMSHEIRTP+N ILG  HL   + +   Q  Y+  I +S
Sbjct: 271  ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQLDYLNTIEKS 330

Query: 652  AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
            A NLLGIIN+ILDFSK+EAGKL ++ I FNL D++ +   +++  A  K +E L  I   
Sbjct: 331  ADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRD 390

Query: 712  IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIA 771
             P  L+GDPLRL Q++ NL  NA+KFT +G IV+ A +   +E    LR +V+DTGIG++
Sbjct: 391  TPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQDTGIGLS 450

Query: 772  QDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVV 831
               +  LF AFSQADNS+ RQ GGTGLGL ISK+L+E MGG+I V S  G+GS F  S+ 
Sbjct: 451  PQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISL- 509

Query: 832  CGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
              L  A     + P   L  +R  +VD ++ AR  L+  L     +V   ++  + L  +
Sbjct: 510  -NLPKAHDDAEALPPQPLLGRRAAIVDGHELARQALEHQLEDCGLSVSLFASYDQLLQGV 568

Query: 892  QQK-----PFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLDGENSK 946
            Q       PF+   +  N+  ++  +L          GH    L   + + + L      
Sbjct: 569  QAASQAGLPFEFAVLGANLGNLSPEQL----------GHYHQQLERYHCQCVVL----CP 614

Query: 947  LVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAHHNSRPNFAGQS--------LLLVE 998
              +  +  P  P+     +        +R    E     RP   G +        +L V+
Sbjct: 615  TTEQALYHPYLPNGHGQLLSKPTCTRKLRRLLLELVQPRRPLAEGSNPNGQRRPKILCVD 674

Query: 999  DNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITATEHIR 1058
            DN  N  +   LL+D G  V+  N+G  A++ ++   FDLVLMD+QMP MDG   TE IR
Sbjct: 675  DNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELFDLVLMDVQMPGMDGRACTEQIR 734

Query: 1059 ANPRWHS---LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQVSDEQ 1115
                  S   LPIVA+TA+AMA +    L +GM+D+L+KPI   +  QV+  +       
Sbjct: 735  LWENTQSGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMKW------T 788

Query: 1116 SFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHFIDSQVDEL 1175
              S  +P +  A       L +  +L  +D E+ +    G      ++L   + S   + 
Sbjct: 789  GLSLGTPQQAQA-----ELLTNGDELKVLDPEEGLRLAAGKADLAADMLSMLLASLDTDR 843

Query: 1176 NSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEMEQSLEQQVLPSFELLQQAQ 1235
             ++     A D +      H L G++   G+  L + A +  ++L +Q  P      QAQ
Sbjct: 844  EAIRAARAADDRNGLIEQVHRLNGASRYCGVPQL-RAACQRSETLLKQDNP------QAQ 896

Query: 1236 SLLTQVDDELS 1246
              L ++D  +S
Sbjct: 897  QALDELDSAIS 907