Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 995 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  259 bits (661), Expect = 1e-72
 Identities = 172/479 (35%), Positives = 269/479 (56%), Gaps = 20/479 (4%)

Query: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509
           AI +  N   +++ E  V        +   ++ +  + +  +  F   + +F  + GL  
Sbjct: 310 AIVVHTNITSRKIMEMNVQNSRDRFSDFARSSSDWYWEMDENLIFTWFSERFSYVTGLDP 369

Query: 510 NEVIDKEPQEIFPAEVAERFAAAHQV-LTQQQSSQNYEVSLVDYTGVQREMLVYEASFSD 568
            EVI K  +E   +E+A      HQ  L+ ++  ++++ ++    G ++ + +      D
Sbjct: 370 QEVIGKT-REYLISEIAPESLVDHQGDLSARRPFRDFDYAIDTGRG-KKYLRISGVPVFD 427

Query: 569 RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGM 628
           +     G  G   D+T  KE+E +LR++K  A+A ++AK  FLANMSHEIRTPMN I+GM
Sbjct: 428 KECGFIGYRGTGSDVTAIKEIEAQLRESKSVAEAANKAKSLFLANMSHEIRTPMNGIIGM 487

Query: 629 AHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDN 688
           AHLAL   L   QR ++  I +SA+ LLGIINDILD SK EAGK+ ++   F+L +++D 
Sbjct: 488 AHLALGGELPAKQRHHIQSIKQSAQRLLGIINDILDLSKAEAGKVVIDAAPFDLANLIDE 547

Query: 689 VTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSAR 748
             +VV+ +A EK +   + I   +P G+IGDPLR+ Q+++N   NAVKFTS G I +  +
Sbjct: 548 AISVVAAQASEKRLPINVRIASEVPRGVIGDPLRIRQILLNYLSNAVKFTSSGGIDVDVQ 607

Query: 749 VSQLNEQQVT-LRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLV 807
           +        T LRFAV DTG G+  ++   LF +F QA+ S + ++GGTGLGL+I++QL 
Sbjct: 608 IEGGKTAPPTKLRFAVSDTGCGLTPEQQATLFQSFQQAEASTSAKFGGTGLGLAIARQLA 667

Query: 808 ELMGGQITVHSEEGKGSTFEFSV-----VCGLQDAKMRDISQ-PVHG---------LADK 852
           ELMGGQ  V S+ G GSTF F+V     V G+ D   + +S   +H          L   
Sbjct: 668 ELMGGQAGVESQYGSGSTFWFTVQFQGAVDGV-DCPSKFLSPIKIHNNFAHQDHSILQGA 726

Query: 853 RVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911
           +VL+ +D+ + + +   LL A    V  V NG  A+ +     ++++ +D  MPGM+GI
Sbjct: 727 QVLLAEDDLTNQMVAVGLLEAAGMLVDVVGNGAAAVEKAASGKYEIVLMDVRMPGMDGI 785



 Score =  138 bits (347), Expect = 3e-36
 Identities = 86/248 (34%), Positives = 134/248 (54%), Gaps = 14/248 (5%)

Query: 979  NEAHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDL 1038
            N   H       G  +LL ED+  NQ VA+GLL+  G+ V V  +G  A+E+     +++
Sbjct: 713  NNFAHQDHSILQGAQVLLAEDDLTNQMVAVGLLEAAGMLVDVVGNGAAAVEKAASGKYEI 772

Query: 1039 VLMDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEV 1098
            VLMD++MP MDGITAT  IR N     LPIVAMTANAM    + CL AGM+D +SKP + 
Sbjct: 773  VLMDVRMPGMDGITATRLIRENVELLDLPIVAMTANAMNEHKDECLAAGMSDFVSKPFQP 832

Query: 1099 DKFYQVLRHFLQVSDEQSFSSHSPNKPSASKPAMNAL----LDLP-QLTGVDLEQAIFRI 1153
            ++ Y V+++++    E S               MNA+    L +P ++ G+++   + R+
Sbjct: 833  EQLYGVIQNWVTGLAEASI---------LGTAGMNAMSGRDLHVPSEIRGLNVRAGLRRV 883

Query: 1154 GGNQQRYFEILRHFIDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLA 1213
             G ++ Y   L+ F+  Q D +  +   I  +D+ +A R AHT KG A  +  + +  + 
Sbjct: 884  AGMKKLYLSSLQSFVQEQGDIVLRLRRAIANRDFETAGRDAHTFKGLAGMIEAKEIVGIT 943

Query: 1214 AEMEQSLE 1221
             ++E  LE
Sbjct: 944  EDIEAGLE 951