Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1258 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  504 bits (1299), Expect = e-146
 Identities = 313/793 (39%), Positives = 461/793 (58%), Gaps = 49/793 (6%)

Query: 452  QLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNE 511
            Q++   E+      ++ E  + ++ IL +    +  L+ DG    VN     ++G   +E
Sbjct: 453  QVAARKEELEAINGQLAEAEERSRLILGSVDEGICGLAQDGTMSFVNPAGARMLGYGLDE 512

Query: 512  VIDKEPQEI----------FPAEVAERFAAAHQVLTQQQSSQNYEVSLV----DYTGVQR 557
            ++ K    +          FP E    F      LT Q      EV  V    D T    
Sbjct: 513  IVGKPLHALAHHTYPDGTPFPRECCSMF------LTSQDGQPRTEVDEVLWRKDGTSFPV 566

Query: 558  EMLVYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHE 617
            E   Y  +   +   V G V    D+TERK  +  L +A + A+A SQAK DFLANMSHE
Sbjct: 567  E---YSTTPVLKDGTVVGTVVTFRDITERKRADALLHQALDRAEAASQAKADFLANMSHE 623

Query: 618  IRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVER 677
            IRTPMNAI+GM+HLAL T L+  QR YV +I +S ++LLGIINDILDFSK+EAGKL+VE+
Sbjct: 624  IRTPMNAIIGMSHLALKTELNPRQRDYVRKIQQSGQHLLGIINDILDFSKIEAGKLSVEK 683

Query: 678  IDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKF 737
               +LD VLDNV  ++S K   KG+E + D+   +P  ++GDPLRLGQ+++N   NAVKF
Sbjct: 684  TAVHLDTVLDNVANLISEKTIAKGLELIFDVASDVPNDMVGDPLRLGQILINYANNAVKF 743

Query: 738  TSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTG 797
            T  GEIV++ R+++   + V LRF V+DTGIG++ +++  LF +F QAD S TR+YGGTG
Sbjct: 744  TETGEIVVAVRLAEDLGEAVRLRFEVRDTGIGLSAEQMGRLFQSFQQADTSTTRKYGGTG 803

Query: 798  LGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVV 857
            LGL+IS++L ELM G++ V S+ G+GSTF F+   G    + R    P   L  + +LVV
Sbjct: 804  LGLAISRKLAELMDGEVGVESQPGRGSTFWFTACLG--KGRPRRALVPKPDLRGRHMLVV 861

Query: 858  DDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQ----KPFDMLFVDWNMPGMNGIEL 913
            DDN++AR +L  +LT+M F V  V +G  A++ +++    KPF+++F+DW MPGM+GIE 
Sbjct: 862  DDNENARAVLVDMLTSMSFRVEAVESGAAAVARVREVAGAKPFEVVFLDWQMPGMDGIET 921

Query: 914  LTRVKTLGLRGHMKSFLVTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGI-- 971
               +  LGL       +VTA+GRE  +    S  ++ +++KPVNPS + DA++ + G   
Sbjct: 922  ARAILGLGLTSPPHMIMVTAHGREEVMKAAESAGIEDVLIKPVNPSIMFDAVMRALGAAL 981

Query: 972  ---EHVRHKTNEAHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEAL 1028
                       E   ++  +  G  +LL EDN+ NQ+VA  LL D G+ V VA +G+ A+
Sbjct: 982  EGDPEEAAAGREVSDDALASLRGLRVLLAEDNDFNQQVATELLADGGVEVEVAENGKIAV 1041

Query: 1029 ERLEHADFDLVLMDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGM 1088
            + +  A +D+VLMDMQMPVMDG+ AT  IR    +  LP++AMTANAM  D +RC  AGM
Sbjct: 1042 DMVMAAPYDMVLMDMQMPVMDGVAATREIR-RLGFGDLPVIAMTANAMQADRDRCAAAGM 1100

Query: 1089 NDHLSKPIEVDKFYQVLRHFLQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQ 1148
            ND+L+KPI+ D+ +  L  +  V+     +  +P  P+ +         +P L  +D + 
Sbjct: 1101 NDYLTKPIDPDELFACLLKWRGVAPT---AVVAPAAPAGA---------VPLLPEIDPDV 1148

Query: 1149 AIF-RIGGNQQRYFEILRHFIDSQVDELNSVTGLIEAQ-DWSSATRVAHTLKGSAANLGL 1206
              F R+G   +     LR  + + +D+  +    +EA+ D ++   VAH LKG+A   G 
Sbjct: 1149 FDFERMGPIYKWDMARLRPILAAFLDDAGTKVARLEAETDLAALREVAHGLKGTANTAGA 1208

Query: 1207 EALAQLAAEMEQS 1219
              L +LAA++E S
Sbjct: 1209 LRLGRLAADVENS 1221