Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1117 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  394 bits (1012), Expect = e-113
 Identities = 274/794 (34%), Positives = 414/794 (52%), Gaps = 45/794 (5%)

Query: 454  SQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVI 513
            +  AE +RLAER        N  IL++  + +  +  +G+   VN     L+     E++
Sbjct: 336  ASQAEIERLAER--------NNSILESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELV 387

Query: 514  DKE--PQEIFPAEVAERFAAAHQVLTQ-QQSSQNYEVSLVDYTGVQREMLVYEASFSDRA 570
              +  P        AE+    +Q+L +  +S ++   S     G    +    +   DR 
Sbjct: 388  GSDILPLMALDLHTAEKL---YQILLRLTESIRDDTASFKRRDGSPLPVEYIASPVMDRG 444

Query: 571  DKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAH 630
            ++V  ++G   D+T+R+ +E +LR+AKEAA+A ++ K +FLA MSHEIRTPMN ++GM  
Sbjct: 445  NQVGVVLGFR-DITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTG 503

Query: 631  LALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVT 690
            L L+T L   QR +   I +S ++LL +INDILDFSKMEAGKL+++  +F L  ++++V 
Sbjct: 504  LLLDTRLSEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVV 563

Query: 691  AVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVS 750
             +++ +A  KGIE    IDP + + +  DP RL QV++NL GNAVKFT +G + +   + 
Sbjct: 564  DILAPRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLL 623

Query: 751  QLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELM 810
               +     RF V+DTGIGI  +    LF  FSQ D S  R+YGGTGLGL+IS++L ELM
Sbjct: 624  DGPDAPAMARFDVRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELM 683

Query: 811  GGQITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSL 870
            GG++ V S  G+GS F  ++   L    +   S     L+  RVLVVDDN     +++  
Sbjct: 684  GGEVGVESAVGRGSRFWITLPLEL----LAPQSAAPPDLSGHRVLVVDDNPVNCDVIERQ 739

Query: 871  LTAMRFNVVTVSNGFEALSEIQQ-----KPFDMLFVDWNMPGMNGIELLTRVKTLGLRGH 925
            L A    V    +    + E+ +      P+++  VD  MP + G E++  +  + +   
Sbjct: 740  LRAFGVEVHACLDAGSGMGELTRAAAMGTPWEVAVVDSQMPVVTGSEMVRMIHAIPMLAG 799

Query: 926  MKSFLVTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKT---NEAH 982
             +  + ++ G   +   +    +DA + KP+  S LLD I    G+     +     E +
Sbjct: 800  TRIVVTSSQGMPAD-QNDGQPAIDAFLHKPLRQSTLLDTIGRVLGLTGPAERPADHAEEY 858

Query: 983  HNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMD 1042
              S P      +L+ EDN VNQ+VALGLL+  G  V V   G EALE +    +D+VLMD
Sbjct: 859  KASEPAAKRLRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLPYDVVLMD 918

Query: 1043 MQMPVMDGITATEHIRANP-RWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKF 1101
            +QMP MDG+ AT  IRA P     +PIVAMTANAM  D + C  AGM+ ++SKPI+  K 
Sbjct: 919  VQMPEMDGLEATRAIRALPLAAAQVPIVAMTANAMRGDDQMCFDAGMDGYISKPIDRHKL 978

Query: 1102 YQVLRHFLQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYF 1161
             + L  +    + +   +  P  P  SK     +LD       D+E              
Sbjct: 979  AEALAKYSGAPETK--PAEPPAAPQNSKAVDRDVLD---ALAADIE---------ADTVV 1024

Query: 1162 EILRHFIDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEMEQSLE 1221
            EIL  F++      N+   L    D     R AHT+KG+AA+LGL A+      +EQ+  
Sbjct: 1025 EILVKFMEDARTRQNNAAALAPTGDLEKVRREAHTIKGAAASLGLLAVRDACLALEQAAR 1084

Query: 1222 Q--QVLPSFELLQQ 1233
               +V P  + L Q
Sbjct: 1085 AGGEVAPQIDRLHQ 1098