Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1248 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  484 bits (1245), Expect = e-140
 Identities = 347/1025 (33%), Positives = 539/1025 (52%), Gaps = 61/1025 (5%)

Query: 124  IERIRQSGIGSVEFLELQNALALSDQLVALEREAFMAVK-----GWKREFAGEYRYTGEP 178
            + RI +S +G ++ L+ Q  LAL       E +A +AV      G     A   R  G  
Sbjct: 216  LARIERS-LGIIQALDYQLRLALDKTGSPPELKAALAVIDAEFFGGGLPLARRIRDMGRT 274

Query: 179  DLNFARSLLYSEKYFLEKAKIMAAI-GSAHSNIVDR---IESEVRAADEKAQFYERVNLV 234
               +        K ++ +  ++  + G+A  +I  R   IE+E R+A +       + L 
Sbjct: 275  GGEYGMGAADFAKIYVPQMNVILGLRGAALHSISARMTGIEAESRSAMQ-------ITLG 327

Query: 235  LVSLSLLVIIASFILLWVIYIAPLSILLKTVVRQVRSEDYKFTLTQKAYGELQRFIDSLN 294
            L  +  + ++  F+++      PLS + + + +  R ED       + + E+   +DSL 
Sbjct: 328  LAGIVFVSVLGCFLVIVRRMWHPLSQVNRALGQLARGEDRMDLPLVRRHDEIGEVVDSLT 387

Query: 295  VVFHHISEQLSFNTLVKDFNIIIRNHPTTEALCNQVTQFLLHHFPVELIGLYLY-----Q 349
             +   + E+   + +      I     + E L +       H  P+  +G   Y     Q
Sbjct: 388  RLAAVVRERAEESHVSGLVAKITSGLQSAEDLASLSQVLFTHLEPILHLGFAGYFRLDDQ 447

Query: 350  NGVLTRIAGVGQSESAQR----DYSDPTTTHCSVLRSGKPYAMKSLNGNFQVVSTSGVIA 405
               L    G  +   A      +  D     C++ +  +   +      +    T  + A
Sbjct: 448  ARALLSCGGYARDGEASPPGRVELGDGLVGECALEK--REILIADPPPGYVRARTGLLSA 505

Query: 406  L-NEVYYLPLQVNNQPIALLELGTVGMLTMQQYHWLSQMLDDLSVAIQL---SQNAEQQR 461
            L   V  LP+    Q + ++EL  +  L       L  +L  L++ +++   ++  +Q  
Sbjct: 506  LPRAVLILPVLSGGQCLGVIELAMLQPLGGTGRRVLDDVLPLLAMRMEILARTERTQQLL 565

Query: 462  LAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLD-------------LMGLY 508
             A R++ E  + NQ  + +  +    +    +  TV   FL              L G  
Sbjct: 566  AATRELAETLEANQTEIQSLLSEQQAIF---EAATVGIAFLKNRVIVRGNPRLDKLFGYG 622

Query: 509  NNEVIDKEPQEIFPAEVA-ERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFS 567
              E++ +  +  F  + A      A++ L++ +  Q  +  L       R       S  
Sbjct: 623  PGELVGQSTRIWFADDAAFADVGGAYEALSRGEVHQREQEYL--RKDQSRFWCRISGSAI 680

Query: 568  DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILG 627
            D +D   G V +L D+T+ +   +   +AK+AA+  ++ K DFLANMSHEIRTPMNAI+G
Sbjct: 681  DPSDLSRGTVWMLEDVTQARATAEAQARAKDAAEDAARTKSDFLANMSHEIRTPMNAIIG 740

Query: 628  MAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLD 687
            MAHLAL T LD  Q+ YV +I +S ++LLGIINDILDFSK+EAGKL VE  + +LD VL+
Sbjct: 741  MAHLALKTDLDPRQKDYVRKIQQSGQHLLGIINDILDFSKIEAGKLEVEATEIHLDKVLE 800

Query: 688  NVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSA 747
            NV  ++S KA  KG+E L D+   +PL L+GD LRLGQV++N   NAVKFT  GEIV++ 
Sbjct: 801  NVGNLISEKATAKGLELLFDVGAGVPLDLMGDALRLGQVLINYANNAVKFTEAGEIVVAV 860

Query: 748  RVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLV 807
            R+ +     V LRF V+DTGIG+  ++   LF +FSQAD S TR++GGTGLGL+ISK+L 
Sbjct: 861  RLMEDLGPDVMLRFEVRDTGIGLTDEQKARLFQSFSQADTSTTRKFGGTGLGLAISKKLA 920

Query: 808  ELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHIL 867
            ELMGG + V S  G+GSTF F+   G    K R    P   L  +R+LVVDDN++AR +L
Sbjct: 921  ELMGGSVGVDSVPGQGSTFWFTARLG--KGKPRAPLIPEAELQGRRMLVVDDNENARAVL 978

Query: 868  DSLLTAMRFNVVTVSNGFEALSEIQQK----PFDMLFVDWNMPGMNGIELLTRVKTLGLR 923
              +L+AM F V  V +G +AL  I+      P+D++F+DW MP M+G+E+  ++ ++ L 
Sbjct: 979  VDMLSAMSFEVDAVDSGAKALDAIRDAVLDLPYDVVFLDWQMPDMDGLEVAEQIHSIRLP 1038

Query: 924  GHMKSFLVTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAHH 983
                  +VTAYGRE  + G  +  +  +++KPV+P+ L D+I+  +  +  R +  +   
Sbjct: 1039 FPPHLIMVTAYGREEIIKGAQAADIGEVLIKPVSPAALFDSIMRVFASDQRRDEAEDVSE 1098

Query: 984  NSRPNFA---GQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVL 1040
                + A   G  +LLVEDN++NQEVA  +L+D G+ V +A++G  A+E+     +DL+L
Sbjct: 1099 GGSVDHAALRGLKVLLVEDNDLNQEVAGEILRDAGIEVEIADNGLIAVEKARAGVYDLIL 1158

Query: 1041 MDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDK 1100
            MDMQMPVMDG+TAT  IR       LPI+AMTANAM  D ++CL+AGMNDH++KPI+ D 
Sbjct: 1159 MDMQMPVMDGVTATREIRRLGH-VDLPIIAMTANAMQADRDKCLEAGMNDHIAKPIDPDT 1217

Query: 1101 FYQVL 1105
             +  +
Sbjct: 1218 MFSTI 1222