Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1196 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  334 bits (856), Expect = 3e-95
 Identities = 253/790 (32%), Positives = 399/790 (50%), Gaps = 63/790 (7%)

Query: 467  VLEQSQLNQEILDATPNPMYCLS-ADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEV 525
            ++E  +  + ILD +P  +     +D   L VN ++ +L  L     +       + A+ 
Sbjct: 399  LIESERRLRRILDTSPLALAISRVSDNAILLVNPRWSELYRLPKGRALGMTVASCY-ADP 457

Query: 526  AERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVGILLDMTE 585
            A R A   +++ ++     +E  +    G +   ++  A      D    ++    D+T 
Sbjct: 458  ANR-ARLVELVRKRGFVSGFECRMRASDGHEFWAMLSAAEIE--MDGEPAVIASSTDITR 514

Query: 586  RKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYV 645
             KE E  L +AK+ A+  SQAK  FLA MSHEIRTPMN +L MA L  + PL   QR+  
Sbjct: 515  HKEEEAALAEAKKVAEEASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPLPAEQREMA 574

Query: 646  TRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFL 705
              I +SA +LL IINDILDFSK+EA KL +E +D +L +V++ V  +++++AQEKGI  +
Sbjct: 575  RVIRDSATSLLTIINDILDFSKIEADKLQLELVDLSLSEVVEGVADLLTIRAQEKGISLI 634

Query: 706  MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKD 765
              +DP +   ++GDP+RL Q++ NL GNA+KFT +G + ++ R     E+ + L F++ D
Sbjct: 635  TFVDPALTDMVVGDPIRLRQIITNLAGNAIKFTDKGYVRIAVRALDPRERPLRLEFSITD 694

Query: 766  TGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGST 825
            TGIG+  ++   LF+ F QAD +I+R+YGGTGLGLSI ++LV +MGG+I V S  G+GST
Sbjct: 695  TGIGLDSEQQARLFEPFMQADITISRRYGGTGLGLSICRRLVAMMGGEIGVRSNVGQGST 754

Query: 826  FEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGF 885
            F F V   L+ A++   ++P   L+   VLV+ +   A   L   L  +   V  V++  
Sbjct: 755  FWFQV--PLEPAEVE--AEPPLDLSGIAVLVLAEGPVAAECLRQYLGHLGAQVAVVASAE 810

Query: 886  EALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLDGENS 945
             A++ ++          W       + LL   +   LR  +   L+TA G ++ L     
Sbjct: 811  GAVAAVRA----AALAGWTY----DVALLDGGQDFRLRLGVAGALMTAAGPDLELKVAML 862

Query: 946  KLVD---------------ALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE---AHHNSRP 987
               D               A++ KP+    L   +  + G      +  +   A    RP
Sbjct: 863  VAQDAFAAVASEVKAAGLYAVLPKPIRRRQLWRNVAVAVGRATPEAEAADGTGAEEGWRP 922

Query: 988  ------NFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLM 1041
                    AG  +L+ EDN  N+ V   L++  G  + V  +G EA ER++  D+ L+L 
Sbjct: 923  PTMEEAAAAGALILVAEDNPTNKVVIRHLMERLGYAIEVVGNGTEAWERMQIRDYGLLLT 982

Query: 1042 DMQMPVMDGITATEHIRANPRW-----HSLPIVAMTANAMAIDIERCLQAGMNDHLSKPI 1096
            D  MP MDG   T+ IR    W     H LPIVA+TA+A+A    RCL +GMN  L+KPI
Sbjct: 983  DCHMPEMDGYELTQRIR---EWEVETGHDLPIVALTADALAGTARRCLDSGMNAFLAKPI 1039

Query: 1097 EVDKFYQVLRHFLQVS---------DEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLE 1147
            ++ +    +R  L  +           +  ++  P     + P   ALL +  LT +   
Sbjct: 1040 DLVQLDSTIRRLLPTAVGLRRRRSGGGEGAAAPLPAAIPVAPPKDEALLPVLDLTPM--- 1096

Query: 1148 QAIFRIGGNQQRYFEILRHFIDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLE 1207
            + IF   G++ R  E+L  F+D+    +  +   ++A D  +A   AH+ KG+  + G  
Sbjct: 1097 RQIFGDIGDEVR--ELLALFVDTTRPLVVDLGDALQAGDALAAREAAHSAKGAGNSAGAF 1154

Query: 1208 ALAQLAAEME 1217
              A+L AE E
Sbjct: 1155 RFAKLCAEAE 1164