Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1616 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  530 bits (1365), Expect = e-154
 Identities = 313/764 (40%), Positives = 454/764 (59%), Gaps = 28/764 (3%)

Query: 578  GILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPL 637
            G   D++  K  E  L +AKE A+  ++ K DFLANMSHEIRTPMNAI+GM+HLAL T L
Sbjct: 857  GFFQDVSAEKLAEAALTRAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKTEL 916

Query: 638  DTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKA 697
               Q  YV +I  + ++LLGIINDILDFSK+EAGKL VE  DF LD VLDN+  +++ K 
Sbjct: 917  TPRQHDYVKKIQSAGQHLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLLTEKT 976

Query: 698  QEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQV 757
            + K +E + DI   +P  L+GD LRLGQ+++N   NAVKFT  GEI + ARV + +E +V
Sbjct: 977  RAKSLELVFDIPSEVPRTLVGDSLRLGQILINYANNAVKFTENGEIDIIARVKERSETEV 1036

Query: 758  TLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVH 817
             L FAV+DTGIGI  ++   LF +F QAD S TR++GGTGLGL+ISK+L ELMGG++ V 
Sbjct: 1037 LLYFAVRDTGIGITAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVGVE 1096

Query: 818  SEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFN 877
            SE GKGSTF F+   G+   + R +  P   L  +RVLVVDDND+AR +L  L+  M F 
Sbjct: 1097 SEYGKGSTFWFTARMGIGTVRKRRL-LPSPDLRGRRVLVVDDNDNARTVLADLMAGMTFQ 1155

Query: 878  VVTVSNGFEALSEIQQ-----KPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSFLVT 932
            V T ++G EA+ E+++      P++++ +DW MPGM+GIE    +  LGL    +  +VT
Sbjct: 1156 VTTRASGLEAVDEVKRAAMAGTPYEIVLLDWRMPGMDGIETAHHLMALGLDPAPRLLMVT 1215

Query: 933  AYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAHHNSR----PN 988
            AYGRE  L+      ++ +++KPV+ S L D I+  +G +    +  +  H+S       
Sbjct: 1216 AYGREEVLNLITEAGIEDVLIKPVSASILFDTIMRLFGCQPAEPRDVDGGHSSSEMHLET 1275

Query: 989  FAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVM 1048
              G  +LLVEDN++NQ+VA  LL D G  V VA+ G  AL ++    +D+VLMDMQMPVM
Sbjct: 1276 IRGARILLVEDNDLNQQVATELLGDAGFQVDVADDGAIALAKVRRNAYDMVLMDMQMPVM 1335

Query: 1049 DGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHF 1108
            DG+ AT  IR   ++  LPIVAMTANAM  D +RCL AGMND ++KPI+ D+ +  L  +
Sbjct: 1336 DGVAATREIRRLGQFDHLPIVAMTANAMQRDRDRCLDAGMNDFITKPIDPDQLWAALLRW 1395

Query: 1109 LQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHFI 1168
            +      + ++H  + PS +    +    +P++ G+D    + R+ G  + Y   LR F 
Sbjct: 1396 IAPRHSPA-AAHGASAPSETGEEHS----IPRIDGLDTTTGLRRVQGKTRLYLTSLRKFA 1450

Query: 1169 DSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEMEQSL-----EQQ 1223
              +      +   +EA DWS+A R+AHT KG A  +G + + + AA++E +L      Q+
Sbjct: 1451 AGRKSVAGDIRAALEADDWSTAERLAHTTKGLAGMIGADEVQRRAADLEAALCDKLSRQE 1510

Query: 1224 VLPSFE-LLQQAQSLLTQVDDELSAWEHQHKEPLLAENLDWGLWYQQLQQAINDYDVTA- 1281
            V    + +     +L+  +D  L     +   P+  +        Q+L   + + D  A 
Sbjct: 1511 VEDLLDAMAAPLAALIAALDSTLP--PEETIAPVAIDRAALDAACQRLLILLAEDDAEAD 1568

Query: 1282 --LSLSKSIRQVSQWDSAQQAALISAIEDFDFEQAKALLASYPQ 1323
              L  +  + Q +  D   +  + +AI+DF+F+QA A L    Q
Sbjct: 1569 DVLEANAGLLQTAFPDHFPR--IRAAIKDFNFDQALATLTEAVQ 1610



 Score = 37.4 bits (85), Expect = 1e-05
 Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 19/200 (9%)

Query: 425 ELGTVGMLTMQQYHWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQS--------QLNQE 476
           +LG +  L+  Q      +L   +   + +   E + L   + LE S        QL ++
Sbjct: 437 DLGEIQELSAAQEAMREALLSSTTRLEEANTTLEARVLERTEELEHSKSTAEWSRQLMRD 496

Query: 477 ILDATPNPMYCL----SADGKFLTVNAKFLDLMGLYNNEVIDKEPQ----EIFPAEVAER 528
           + D+ P   +      S D  F  ++AK  ++ G   +E+I+ EP      I P ++A+ 
Sbjct: 497 MADSLPCAAFRFEVAPSGDQSFRFISAKAEEIWGYTPDELIN-EPDLRFWRIHPGDLAKA 555

Query: 529 FAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVGILLDMTERKE 588
             A  + L +  SS N    +++  G  R  +   A  S  AD      G  LD+TER+E
Sbjct: 556 HQALEEALLEG-SSTNQLYRVMNRHGEAR-WIETRAMASRLADGTRVWNGYWLDVTEREE 613

Query: 589 MEDELRKAKEAADAMSQAKG 608
               +  A E   A+ Q+ G
Sbjct: 614 ALAAMTGAMEEQSAIFQSAG 633