Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 918 a.a., BarA sensory histidine kinase (= VarS = GacS) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  337 bits (863), Expect = 4e-96
 Identities = 233/693 (33%), Positives = 365/693 (52%), Gaps = 31/693 (4%)

Query: 554  GVQREMLVYEASFSDRADKVNGIVGILLDMTERKEMED-ELRKAKEAADAMSQAKGDFLA 612
            G+    +   A   +    ++     L +  E+ E+++ EL  AK+ A   ++ K +FLA
Sbjct: 239  GINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLA 298

Query: 613  NMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGK 672
            NMSHE+RTP+N ++G   L L T L+ TQR ++  I  SA NLL IIND+LDFSK+EAGK
Sbjct: 299  NMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGK 358

Query: 673  LNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCG 732
            L +E I F L + LD V  +++  + +KG+E  ++I   +P  +IGDPLRL QV+ NL G
Sbjct: 359  LILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVG 418

Query: 733  NAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQ 792
            NA+KFT  G I +      L+  +V +   ++DTGIGI +     LF AF QAD SI+R+
Sbjct: 419  NAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRR 478

Query: 793  YGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADK 852
            +GGTGLGL I+++LV  MGG I+ HS+  +GSTF F +   L    + D       LA K
Sbjct: 479  HGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIID-GPSTACLAGK 537

Query: 853  RVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIE 912
            R+  V+ N +A      LL+     VV  S  F AL       +D++ +  ++P      
Sbjct: 538  RLAYVEPNATAAQCTLDLLSDTPVEVV-YSPTFSALPLAH---YDIMIL--SVPVTFREP 591

Query: 913  LLTRVKTLGLRGHMKSFLVTAYGREINLDGENSKL--VDALIVKPVNPSNLLDAIVTSYG 970
            L  + + L     M  FL+ A      ++ E  K     A ++KP+  + LL A+     
Sbjct: 592  LTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQ 651

Query: 971  IEHVRHKTNEAHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALER 1030
            + H  H        S+      +++ V+DN  N ++   LL+D   +V + + G +A++R
Sbjct: 652  LNH--HPEPLLMDTSK---ITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR 706

Query: 1031 LEHADFDLVLMDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMND 1090
             +   FDL+LMD+QMP MDGI A E I   P     P++A+TA+AMA   E+ L AGMND
Sbjct: 707  AKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMND 766

Query: 1091 HLSKPIEVDKFYQVLRHFLQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAI 1150
            +L+KPIE +K + +L  +          ++   +  A +PA    +  P  T +D + A+
Sbjct: 767  YLAKPIEEEKLHNLLLRYKP-------GANVAARLMAPEPA--EFIFNPNAT-LDWQLAL 816

Query: 1151 FRIGGNQQRYFEILRHFIDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALA 1210
             +  G      ++L+  ID   +  N +   +  ++ +    + H L GS    G+  + 
Sbjct: 817  RQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMK 876

Query: 1211 QLAAEMEQSL-----EQQVLPSF-ELLQQAQSL 1237
             L   +EQ L     E+++ P F ELL +  ++
Sbjct: 877  NLCQLIEQQLRSGVHEEELEPEFLELLDEMDNV 909