Pairwise Alignments
Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056
Subject, 1329 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526
Score = 365 bits (938), Expect = e-104
Identities = 244/776 (31%), Positives = 431/776 (55%), Gaps = 30/776 (3%)
Query: 453 LSQNAEQQRLAERKV-LEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNE 511
++ + +++ AE+ + +E+++LN + A P + + +++ + ++L+ L +
Sbjct: 538 MATDITKRKKAEKALTIEKARLNAFVTHA-PAAVAMFDKEIRYIAYSNRWLEEYQLEGKD 596
Query: 512 VIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRAD 571
+ K E+F ++E + A H + + N E + L +E D
Sbjct: 597 LYGKSHYEVF-GTISEEWKAIHARCLKGEVISNEEDRWRPDGWDHDQFLRWEVRPWHHYD 655
Query: 572 -KVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAH 630
+ GI+ + D+TE +EL+KAK A+ S+AK +FLANMSHEIRTP+N ++G
Sbjct: 656 GSIGGIMMLTQDITESCLQREELKKAKILAEQASKAKSEFLANMSHEIRTPLNGVIGFTD 715
Query: 631 LALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVT 690
L L T L TQ +Y++ +N+S LL IINDILDFSK+EAGKL ++ +L ++ + +
Sbjct: 716 LVLKTDLSETQAQYLSIVNQSGNALLNIINDILDFSKIEAGKLELDIDRCDLYELTEQTS 775
Query: 691 AVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVS 750
+++ + +KG+E L++I P IP + D +R+ Q+MVNL GNA KFT +GEI L
Sbjct: 776 DIITYEVHKKGLEMLLNIHPDIPRFIWVDSVRVKQIMVNLLGNASKFTEEGEIELQLYPI 835
Query: 751 QLNE--QQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVE 808
+E +++ +RF+V+DTGIGI +K +F+AFSQ D S T++YGGTGLGL+IS +L++
Sbjct: 836 DKDEASREMVIRFSVRDTGIGIKAEKQTKIFEAFSQEDVSTTKKYGGTGLGLTISNRLLQ 895
Query: 809 LMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILD 868
LM + +HS GKGSTF F + + + + + L+ + VL+VDDND+ R I++
Sbjct: 896 LMHSGLQLHSTVGKGSTFYFDLNVKYEYGERITLEE---DLSVENVLIVDDNDNNRMIIE 952
Query: 869 SLLTAMRFNVVTVSNGFEALSE-IQQKPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMK 927
++ + NGFEA+ + ++ + FD++ +D++MP MNGIE + +++ + R +
Sbjct: 953 RMMALRGISTSQAKNGFEAIQKFVEGEKFDVVLMDYHMPYMNGIETIRKIREIVDRQPI- 1011
Query: 928 SFLVTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTN---EAHHN 984
FL ++ + L V +VKP+ + DA+++ + R T+ + N
Sbjct: 1012 IFLHSSSDDDKILKACKELGVRKKLVKPIKLQEMYDALLSINKKQDYRKATDQNIDLPKN 1071
Query: 985 SRPNFAGQSLLLVEDNEVNQEVALGLLQD--TGLNVVVANHGQEALERLEHADFDLVLMD 1042
PN +L+VEDN +N +A ++ + ++ A +G+EALE ++ ++ MD
Sbjct: 1072 LFPN--DGKVLIVEDNTINMLLAKTVIHNLSPATAILEAANGKEALEVMKDELPSVIFMD 1129
Query: 1043 MQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFY 1102
+QMP M+G AT+ IR H++ I+A+TA + + E+C+QAGMND ++KP +
Sbjct: 1130 VQMPEMNGYEATQAIRKKYNKHNILIIALTAGNIKGEREKCMQAGMNDFIAKPFVEEDVI 1189
Query: 1103 QVLRHFLQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFE 1162
+++ + + H+P+ S SK +L +D QA+ + F+
Sbjct: 1190 KLMEKWHFNDLDSDLKIHAPSSESPSK----------RLFDIDKFQAVLGFPDLESEMFQ 1239
Query: 1163 ILRHFIDSQVDELNSV-TGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEME 1217
I+ S++++ + +++ QD ++ AH L +A+ + L L+ LA +ME
Sbjct: 1240 IILKSGKSELEKSEATFLEILQNQD-EGISQAAHKLYSTASAMYLSKLSTLATKME 1294
Score = 35.0 bits (79), Expect = 5e-05
Identities = 36/185 (19%), Positives = 77/185 (41%), Gaps = 24/185 (12%)
Query: 455 QNAEQQRLAERKVLEQSQLNQEILDATPN-PMYCLSADGKFLTVNAKFLDLMGLYNNEVI 513
Q+ Q++AE ++++ +L +++ +A+ + +G N ++G E++
Sbjct: 398 QDITVQKMAEMEIIKSKKLLEDVQNASSEVSIISTDTEGIITVFNKGAEKMLGYTAEEMV 457
Query: 514 DKEPQEIF--PAEVAERFAAAHQVLTQQ-----------------QSSQNYEVSLVDYTG 554
K+ + P EV ER +VL++Q ++ E + + G
Sbjct: 458 GKQTPAVIHEPKEVKER----SKVLSKQYEKPIEGFRVFVHKSELDGAEEREWTYIRKDG 513
Query: 555 VQREMLVYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANM 614
+ + + + + K+ G +G+ D+T+RK+ E L K +A +A
Sbjct: 514 SRLAVSLAVTTMRHESGKITGYLGMATDITKRKKAEKALTIEKARLNAFVTHAPAAVAMF 573
Query: 615 SHEIR 619
EIR
Sbjct: 574 DKEIR 578
Score = 34.7 bits (78), Expect = 6e-05
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 491 DGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLV 550
+G FL N + +G + E++ K ++ P + + + Q +SQ + +
Sbjct: 183 EGNFLMANKASANSLGFHKGELVGKSLSDVIPLQYHGSLKQYLKYIRQNGNSQG-TMHVQ 241
Query: 551 DYTGVQREMLVYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKE 598
G R L +D+A ++G LD+TER +E E + KE
Sbjct: 242 HKDGSIRIWLYSNILLNDQAGTPY-VLGNALDITERHRLEREYNRLKE 288