Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1172 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  364 bits (935), Expect = e-104
 Identities = 257/829 (31%), Positives = 458/829 (55%), Gaps = 63/829 (7%)

Query: 440  LSQMLDD-------LSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADG 492
            +S M DD       L VA  ++   ++++  +  ++E+++L+   +   P  +  L  + 
Sbjct: 367  MSPMRDDNGEINGYLGVATDIT---DEKKATQNLLIERARLHS-FVKHVPAAVAMLDNEL 422

Query: 493  KFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAH------QVLTQQQSSQNYE 546
            KF+  + K++++ GL   ++I K   EIF   ++E +   H      +V+  ++     E
Sbjct: 423  KFIAYSDKWIEMYGLEKEDLIGKSHYEIF-TNISEEWQEVHRRGLGGEVIKCEEDVWRPE 481

Query: 547  VSLVDYTGVQREMLVYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQA 606
                D   V+ E+  +  S     +K+ GI+ +  D+TE    +++L+++   A+  ++A
Sbjct: 482  GWSHDQY-VRWEIRPWYRS----KEKIGGILMLTEDITEAYFQKNDLQQSMRHAEQANRA 536

Query: 607  KGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFS 666
            K +FLANMSHEIRTP+N I+G + L L T L+  Q +Y++ +N+SA +LL IINDILDFS
Sbjct: 537  KSEFLANMSHEIRTPLNGIIGFSDLVLKTELNDRQEQYLSIVNQSANSLLNIINDILDFS 596

Query: 667  KMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQV 726
            K+EAGKL+++   ++L ++++  + +++    +KG+E L++I P+IP     D +RL QV
Sbjct: 597  KIEAGKLDLDIERYDLYELVEQASDIITYVIHQKGLEMLLNISPNIPRFAWIDSVRLKQV 656

Query: 727  MVNLCGNAVKFTSQGEIVLS-ARVSQLNEQ-QVTLRFAVKDTGIGIAQDKLDDLFDAFSQ 784
            +VNL GNA KFT +GEI L    +S  N+  ++ +RF+V+DTGIGI  +K D +F+AFSQ
Sbjct: 657  LVNLLGNASKFTDKGEIELKLTPLSNSNKNGEMDIRFSVRDTGIGIKSEKQDKIFEAFSQ 716

Query: 785  ADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRDISQ 844
             D S T++YGGTGLGL+IS +L++LMG ++ + S   +GSTF F +    +D +    + 
Sbjct: 717  EDVSTTKKYGGTGLGLTISNRLLQLMGSKLQLTSTPNRGSTFYFDLRIKCEDGQ----AI 772

Query: 845  PVHGLAD-KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSE-IQQKPFDMLFVD 902
            P+ G  +  ++L+VDDN + R I++ +L       V   NG+EA+   +  + +D++ +D
Sbjct: 773  PLEGEPNLHKILIVDDNANNRMIIERMLALKGIQTVQAKNGYEAIQRLVDGEEYDVILMD 832

Query: 903  WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLDGENSKLVDALIVKPVNPSNLL 962
            + MP +NGI+   +++       +     ++  + I+L  +   +   LI KP+   ++ 
Sbjct: 833  FQMPYLNGIDTARKIRANFKEQPIIFLHSSSEDKTISLASKELSIPHRLI-KPIKMQDMY 891

Query: 963  DAIVTSYGIEHVRHKTNEAHHNS--RPNFAGQ--SLLLVEDNEVNQEVALGLLQDTG--L 1016
            DA++    I+H   K  E        P    +  S+L VEDN +N  +   ++ +     
Sbjct: 892  DALLK---IKHNNRKGKEPKEKRLYAPPLLTEKSSILFVEDNAINMLLGKTVIHNISPKT 948

Query: 1017 NVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAM 1076
             V+ A++G++ALE L+    D++ MD+QMP M+G  AT+ IR   +  +L I A+TA  +
Sbjct: 949  TVLEASNGKQALELLKVNLPDMIFMDVQMPEMNGYEATKIIRKEYKNKNLLIFALTAGNL 1008

Query: 1077 AIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQVSDEQSFSSHSPNKPSASKPAMNALL 1136
              + E+C++AGM+D ++KP   +   ++L  + +  D+     ++P+ PS +    N   
Sbjct: 1009 KGEKEKCMEAGMDDFIAKPFVEEDLIRLLEKWSKSIDKH---KNAPSIPSENLNPFNIRK 1065

Query: 1137 DLPQLTGVDLEQAIFRIGGNQQRYFEILRHFIDSQVDELNSVTGLIEAQDWSSATRVAHT 1196
                +   DLE  IF+      +   I +  +    D L     L+ A D    +++AH 
Sbjct: 1066 LQLVMDFKDLEDPIFK------QLINISKKELTKTKDSLE----LLPAIDNPDLSKIAHK 1115

Query: 1197 LKGSAANLGLEALAQLAAEMEQSLEQQVLPSFELLQQAQSLLTQVDDEL 1245
            L  SA +L +E LA LA+++E +          L  +  SL++ + DE+
Sbjct: 1116 LYSSATSLCMEKLASLASKLENA---------SLSMEKHSLISSLTDEI 1155