Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 956 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  254 bits (649), Expect = 3e-71
 Identities = 161/536 (30%), Positives = 288/536 (53%), Gaps = 20/536 (3%)

Query: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509
           ++ +  +  ++ LAER++++     + +L++ P+ ++     G +L    +  D++    
Sbjct: 425 SVGICTDITEKYLAERELIKSENRLRSVLNSLPDIIFIYDNQGVYLDYYVQESDMLISPP 484

Query: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569
              + K  ++I P    E+  +A     +    Q  +++L   +G +   + +     +R
Sbjct: 485 ELSLGKHIRDIIPPPYGEKMESALLRAAKTGKVQTEQMTLDLPSGKKFLEIRFFKLDEER 544

Query: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629
                 ++ +  D+TE+K  E  L++AKE A+  ++AK +FLA+MSHEIRTPMN +LGM 
Sbjct: 545 ------MISVGRDVTEQKLWEKGLKEAKEVAEGANRAKSEFLASMSHEIRTPMNGLLGMI 598

Query: 630 HLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNV 689
            L  +T +D  Q+  V  I +S ++LL II DILD+SK+E GKL +E       + L+ V
Sbjct: 599 GLLEHTKMDDEQQSIVKVIKDSGESLLVIIKDILDYSKIEEGKLELELSSSKFREELNKV 658

Query: 690 TAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQ-GEIVLSAR 748
             + S     K +   +DI P IP  LI D  +L Q++ N+ GNAVKFT + G++ +   
Sbjct: 659 INIFSGMVVGKELSLNLDIAPTIPQWLILDNEKLSQILFNIIGNAVKFTPKGGDVSIKVS 718

Query: 749 VSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVE 808
              + ++   L F VKDTG+GI + K+D L + F+Q       +  G+GLGL+I+ +L+E
Sbjct: 719 GEPILDKNFMLYFNVKDTGVGIPKSKIDQLINPFTQTGRGTAEEKSGSGLGLAIANKLIE 778

Query: 809 LMGGQITVHSEEGKGSTFEFSVVCGLQDA----------KMRDISQPVHGLAD---KRVL 855
           LMGG + + SE GKGS F F+V   + D+          K       +  ++D   K +L
Sbjct: 779 LMGGSLQIESEVGKGSEFSFTVFARISDSEEKVGKDDYEKYAKEEYKLSHISDKFPKEIL 838

Query: 856 VVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLT 915
           + +DND     +  L+  + ++V TVS G EA+  +Q+K +DM+F+D+ MP M+G+E   
Sbjct: 839 LAEDNDINLKFMKLLMKQLGYSVDTVSTGEEAVKAVQKKRYDMIFMDYQMPVMDGLEASR 898

Query: 916 RVKTLGLRGHMKSFLVTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGI 971
            +K +    +++   ++A   + +++      +D  + KP+   +++  I  S G+
Sbjct: 899 EIKKMKEGKYIRIIGLSANVFKEDIERAYEAGMDDYLTKPIKIQDVVMKIKESSGM 954



 Score = 85.5 bits (210), Expect = 2e-20
 Identities = 39/107 (36%), Positives = 69/107 (64%)

Query: 992  QSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGI 1051
            + +LL EDN++N +    L++  G +V   + G+EA++ ++   +D++ MD QMPVMDG+
Sbjct: 835  KEILLAEDNDINLKFMKLLMKQLGYSVDTVSTGEEAVKAVQKKRYDMIFMDYQMPVMDGL 894

Query: 1052 TATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEV 1098
             A+  I+       + I+ ++AN    DIER  +AGM+D+L+KPI++
Sbjct: 895  EASREIKKMKEGKYIRIIGLSANVFKEDIERAYEAGMDDYLTKPIKI 941



 Score = 50.8 bits (120), Expect = 6e-10
 Identities = 57/268 (21%), Positives = 113/268 (42%), Gaps = 25/268 (9%)

Query: 349 QNGVLTRIAGVGQSESAQRDYSDPTTTHCSVLRSGKPYAMKSLNGNFQVV-STSGVIALN 407
           QN  L  + GV + +  +    D T      + +  P+ +  L G F +V +    I ++
Sbjct: 213 QNEYLGGLRGVYEGDILKYQ-QDGTAARLKAIVAQYPFNLFPLEGKFAIVFAQDQSIIIS 271

Query: 408 EVYYLPLQVNNQPIALLELGTVGMLTMQQY----HWLSQMLDDLSVAIQLSQNAEQQRLA 463
            +Y            LL +G   +L +  Y    H +S  +D+  +A++  Q+ +  RL 
Sbjct: 272 RLY--------NTYFLLFVGLFTLLILVIYLLIKHGIS--IDERHIALE-KQSQQINRLF 320

Query: 464 ERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPA 523
           E++ +        +L  T   +Y   A GK   V+    +++G    E ++    ++   
Sbjct: 321 EQQTM--------LLQETNGFVYYHDASGKVSNVSENVTNVLGFTKEEFLENNKSQVVEK 372

Query: 524 EVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVGILLDM 583
           ++ +    A + L ++    ++EVS +   G       +E  F D+  K    VGI  D+
Sbjct: 373 DLQKLQEKAKKALDEKWDYLSFEVSFLKKDGAIIRTKNFERLFYDQEGKFVSSVGICTDI 432

Query: 584 TERKEMEDELRKAKEAADAMSQAKGDFL 611
           TE+   E EL K++    ++  +  D +
Sbjct: 433 TEKYLAERELIKSENRLRSVLNSLPDII 460