Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1270 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2

 Score =  300 bits (768), Expect = 6e-85
 Identities = 226/672 (33%), Positives = 335/672 (49%), Gaps = 45/672 (6%)

Query: 582  DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQ 641
            D+T RK+ E+ LR AKE A+  +++K +FLA MSHEIRTPMN +LGM  L   TPLD  Q
Sbjct: 567  DITARKQAEEALRSAKEQAEIAARSKAEFLATMSHEIRTPMNGVLGMLELMALTPLDEEQ 626

Query: 642  RKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKG 701
            R  V+ + +S   LL II+DILD SK+EAGKL +E ++    D+++ V+ +++ +A +KG
Sbjct: 627  RTLVSTMRDSGAALLRIIDDILDLSKIEAGKLELEELELRPADLVEGVSDLLAPQAHQKG 686

Query: 702  IEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL----------SARVSQ 751
            +  +  ID  +P  L GD  RL Q++ NL GNA+KFT +G +VL              + 
Sbjct: 687  LALICAIDRLVPDRLRGDSGRLRQILFNLTGNAIKFTDRGRVVLRVGTVGPVNADTDANP 746

Query: 752  LNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMG 811
                 V L  AV+DTGIGI  +    LF  FSQAD+S TR++GGTGLGL+I  +L+E MG
Sbjct: 747  ARPDHVRLHVAVEDTGIGIGPEGQARLFQPFSQADSSTTRRFGGTGLGLAICTRLIERMG 806

Query: 812  GQITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLL 871
            G+I V S  G GSTF F+V        +     P   L    VLV D+++  R +L   L
Sbjct: 807  GRIGVTSVPGAGSTFWFTVELPRAPEPLSSPLPPA-PLDGLPVLVADEDEVQRAVLACYL 865

Query: 872  TAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLG----LRGHMK 927
                  V   S+  +  S++ +  F +L     + G   ++ L      G    L G  +
Sbjct: 866  EQGGAAVTVSSSVADTASKLGRGGFGLLVTTTALAGR--LDPLVGACAPGLPRLLLGDGR 923

Query: 928  SFLVTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVT-------------SYGIEHV 974
            +    A G              A +V+PV+ + L+ A  T               G    
Sbjct: 924  TTGGGAAGGGAVASPHTVSGSAAGLVQPVHRAALIRAAATLTGRTAPDAIGAEPAGQPPA 983

Query: 975  RHKTNEAHHNSRPNFAGQS-LLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEH 1033
            R+  + A      + AG   +L+ ED+  NQ+V L  L+  G    +A  G++AL     
Sbjct: 984  RNADSGAAAPGPADTAGHGPILVAEDHPTNQQVVLRQLRRLGYAAELAADGEQALAAWRV 1043

Query: 1034 ADFDLVLMDMQMPVMDGITATEHIRANPR--WHSLPIVAMTANAMAIDIERCLQAGMNDH 1091
                L++ D  MPVMDG      IRA  R       IVAMTANA++ ++ERCL AGM+D+
Sbjct: 1044 GRHRLIVTDCHMPVMDGYELARRIRAEERDGRRRTSIVAMTANALSGEMERCLAAGMDDY 1103

Query: 1092 LSKPIEVDKFYQVLRHFLQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIF 1151
            L+KP+ + +  QVL  +L+           P    A  PA  A  +   +  +D  +  F
Sbjct: 1104 LAKPVTLAQLSQVLGRWLEA---------RPPPAEAPIPAPAAAEEALPVLDLDHVRETF 1154

Query: 1152 RI---GGNQQRYFEILRHFIDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEA 1208
                  G      +++  FI++    L  V   ++A D   A   AH+  G+A   G +A
Sbjct: 1155 GCTAENGLDDGTLDMMDFFIETTRPTLERVRQALDAGDREEARAAAHSAAGAARTAGAKA 1214

Query: 1209 LAQLAAEMEQSL 1220
            LA     +E+++
Sbjct: 1215 LAAACTALERAV 1226