Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1373 a.a., Sensor kinase protein RcsC from Alteromonas macleodii MIT1002

 Score =  335 bits (858), Expect = 2e-95
 Identities = 222/572 (38%), Positives = 319/572 (55%), Gaps = 62/572 (10%)

Query: 587  KEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVT 646
            K   ++L+KA E A+  ++ K +FLANMSHEIRTPMN ++GM  L   + L T Q + V 
Sbjct: 811  KAQANDLKKALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLLKKSNLTTEQSQRVN 870

Query: 647  RINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLM 706
              + SA +LL +INDILDFSK+EA KL +E ++F++ ++++++   V+  AQEKG++ ++
Sbjct: 871  IASSSANSLLALINDILDFSKIEADKLEIESVEFDVRELIESIAQSVAHLAQEKGLDVVV 930

Query: 707  DIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTL-RFAVKD 765
            D+       +  DP R+ Q++ NL  NAVKFT QGE+ ++A +   N Q   L   AV D
Sbjct: 931  DLSKVSESKINSDPSRIQQILTNLLSNAVKFTEQGELSVTAELLPTNNQNTALMHIAVAD 990

Query: 766  TGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGST 825
            TGIGI   KL  LFDAF+Q D S TR+YGGTGLGLSI+K+L +L+GG I+V +E GKGS 
Sbjct: 991  TGIGIPASKLPHLFDAFTQVDASTTRRYGGTGLGLSITKKLCQLLGGDISVTTELGKGSR 1050

Query: 826  FEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGF 885
            F+  V C ++ A+ R+  +P     D   L++DDN S R  + S L       +T S+  
Sbjct: 1051 FD--VTCEIRYAEQRNAVRPQLAKQDMCCLIIDDNASTRRAMQSQLKLWGVLTLTASSIE 1108

Query: 886  EALS--------EIQQKPFDMLFV----DWNMPGMNGIELLTRVKTLGLRGHMKSFLVTA 933
            EA+S        EI   P D++F+    +       G  LL   +T     H +  L+T 
Sbjct: 1109 EAISLYLKDSEQEIPAIPIDVVFLEKAEEEEFSQHFGQILLDNPRT----KHTRLVLMTQ 1164

Query: 934  YGREINLDGENSKL-----VDALIVKPVNPSNLLDAIVTSY------------------- 969
                   D E+S +     VD  + KP+  S+L+  +  S                    
Sbjct: 1165 LS-----DMESSVVYGGIDVDESLPKPLTSSDLIRIVEESVNTSDYEAKPRFRKREDDPV 1219

Query: 970  -----GIEHVRHKTNEAHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHG 1024
                   +HV+     A   S  N     +LLVEDN +NQ VA  +L+  G  V VAN+G
Sbjct: 1220 HIIEGNTQHVQSPEENAKSTSDDN--AYRILLVEDNAINQIVATNVLESEGYEVDVANNG 1277

Query: 1025 QEALERLE----HADFDLVLMDMQMPVMDGITATEHIR---ANPRWHSLPIVAMTANAMA 1077
             EALE L+     A +  ++MD QMP MDG  AT+ IR   A   +  +PI+AMTANAM 
Sbjct: 1278 VEALELLKSSKLKAHYSAIVMDCQMPEMDGFEATKLIRYGAAGDVYKRVPIIAMTANAMQ 1337

Query: 1078 IDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109
             D + C++AGM+D L+KPIE +K    L+H+L
Sbjct: 1338 GDKDMCMKAGMDDFLTKPIEHNKVTSTLQHWL 1369