Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1111 a.a., Sensory/regulatory protein RpfC from Alteromonas macleodii MIT1002

 Score =  273 bits (697), Expect = 8e-77
 Identities = 178/543 (32%), Positives = 300/543 (55%), Gaps = 24/543 (4%)

Query: 444 LDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMY-CLSADG-KFLTVNAKF 501
           +D   V +  + +  +++  E  + E     + ++   P   Y CLS  G   + ++   
Sbjct: 370 IDGKPVFVSFASDLRKRKEMEDALRESEAKFRSLISNIPGMAYRCLSMPGWPMVFISDAV 429

Query: 502 LDLMGLYNNEVIDKEPQEIF-----PAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQ 556
           +++ G    + I   P+  F     P++V ER ++    ++  + + +YE  +V  +G  
Sbjct: 430 IEVTGYPPEDFILPNPKRSFADLYHPSDV-ERLSS----ISPDEGAFSYEYRIVAKSGEV 484

Query: 557 REMLVYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSH 616
           + ++ +     D    V  + G + D+T RK ME+EL+ AKE A+  + A+  FLANMSH
Sbjct: 485 KWVIEHGVQVKDDDGMVLYVDGFISDITHRKVMENELKAAKENAEQAAAARTAFLANMSH 544

Query: 617 EIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVE 676
           EIRTPMNAI+G + L L   L   Q+ ++T IN SA++LL ++NDILD +K++ GKL+++
Sbjct: 545 EIRTPMNAIIGFSDLMLGEALREEQKSHLTTINRSARSLLHLLNDILDSAKLDKGKLDLD 604

Query: 677 RIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVK 736
             DF + + LD V +   L+A+ K +  ++++D  +  G  G P R+ QV+ NL GNAVK
Sbjct: 605 YRDFLIREELDLVISTFWLEAKRKKVGLVLNVDDSVANGYRGVPERMRQVLNNLIGNAVK 664

Query: 737 FTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGT 796
           FT +GE+ ++ +       +  + F V DTGIG+ Q++++ +FD FSQAD S++R+YGGT
Sbjct: 665 FTHEGEVTINVK-----SDEKYVYFDVTDTGIGMTQEQVERVFDPFSQADASMSRKYGGT 719

Query: 797 GLGLSISKQLVELMGGQITVHSEEGKGSTFEFSV---VCGLQDAKMRDI-SQPVHGLADK 852
           GLG +ISKQLVELMGG I   SE+GKG+TF F +   V  + D    ++ S+ V      
Sbjct: 720 GLGTTISKQLVELMGGNICATSEKGKGTTFTFRLPLEVVEIDDYVSSELSSKAVRIETSL 779

Query: 853 RVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIE 912
            VL+VDD      +L  LL     +V T ++G  AL +++ K FD++ +D  MP ++G+E
Sbjct: 780 TVLIVDDVQQNLELLSLLLKRAGHSVETATDGQIALDKMRAKSFDVVLMDLQMPKLDGLE 839

Query: 913 LLTRVKTLGLRGHMKSFLVTAYGREINLDGENSKL---VDALIVKPVNPSNLLDAIVTSY 969
              + +       +    + A    + +  +++     ++    KPV+   L+D I    
Sbjct: 840 AAKKRREFEKENSLPPTPIIALTASVLVQDKHAAQQAGMEGFANKPVDFPQLMDEIARVL 899

Query: 970 GIE 972
            I+
Sbjct: 900 NID 902



 Score =  106 bits (265), Expect = 1e-26
 Identities = 94/345 (27%), Positives = 170/345 (49%), Gaps = 30/345 (8%)

Query: 993  SLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGIT 1052
            ++L+V+D + N E+   LL+  G +V  A  GQ AL+++    FD+VLMD+QMP +DG+ 
Sbjct: 780  TVLIVDDVQQNLELLSLLLKRAGHSVETATDGQIALDKMRAKSFDVVLMDLQMPKLDGLE 839

Query: 1053 ATEHIRANPRWHSL---PIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109
            A +  R   + +SL   PI+A+TA+ +  D     QAGM    +KP++  +    +   L
Sbjct: 840  AAKKRREFEKENSLPPTPIIALTASVLVQDKHAAQQAGMEGFANKPVDFPQLMDEIARVL 899

Query: 1110 QVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHFID 1169
             +   Q  S   P+    + PA    +D   L   DL++A+  + G+++   + +  F  
Sbjct: 900  NIDTLQVDS--VPDTLEVNAPASALKVDKNVL---DLKKAV-DLWGSEEAVLQEVDKFST 953

Query: 1170 SQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEME-QSLEQQVLPSF 1228
            +  D+++ + G    +D+ +   ++H LKG++ NL L        E+E Q+L+ +V  + 
Sbjct: 954  TCRDKVDDLMGAAIREDYKAVAALSHGLKGTSGNLCLTTFYHTTREIEAQALKSEV--NI 1011

Query: 1229 ELLQQAQSLLTQVDDELSAWEHQHKEPLLAEN-----LDWGLWYQQLQQAI-----NDYD 1278
            E + + +  L +++  L       K PL AEN     +D  L    L+  +     N  D
Sbjct: 1012 EDVNRLRDALDKIELMLG------KSPLYAENAINESIDNALLLSHLEAMLDSVEQNMVD 1065

Query: 1279 VTALSLSKSIRQVSQWDSAQQAALISAIEDFDFEQAKALLASYPQ 1323
               LS  + +   S  +   Q  ++  I+DF+FE A   +++  Q
Sbjct: 1066 EDELSFLREVGCSSHKEQITQ--ILLDIDDFEFELAHERISTLIQ 1108



 Score = 33.1 bits (74), Expect = 1e-04
 Identities = 41/175 (23%), Positives = 68/175 (38%), Gaps = 24/175 (13%)

Query: 466 KVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAE- 524
           + +E  ++   I D   + +  +   G   T N     + G    E+I     EI   E 
Sbjct: 264 RAIESERIQSAITDTAVDAILTVDEKGIIKTANPSVERIYGYTQQEIIGMHASEIITPER 323

Query: 525 ---VAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVGILL 581
                + F +   V T Q      EV ++   G +R  +     ++ + D     V    
Sbjct: 324 RHLFGDDFFSQRVVPTVQIIGTGREVEVLRKDG-ERIPVRLGVGYT-KIDGKPVFVSFAS 381

Query: 582 DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTP 636
           D+ +RKEMED LR+        S+AK           R+ ++ I GMA+  L+ P
Sbjct: 382 DLRKRKEMEDALRE--------SEAK----------FRSLISNIPGMAYRCLSMP 418