Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 919 a.a., Signal transduction histidine-protein kinase BarA from Alteromonas macleodii MIT1002

 Score =  267 bits (683), Expect = 3e-75
 Identities = 185/522 (35%), Positives = 269/522 (51%), Gaps = 31/522 (5%)

Query: 587  KEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVT 646
            +E    L  A++ A   S  K  FLANMSHEIRTP+NAILG +    N  L T Q++ V 
Sbjct: 411  EEQNARLDIARKDAIKASNVKSQFLANMSHEIRTPLNAILGFSKELNNASLPTDQQEQVR 470

Query: 647  RINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLM 706
             +N +A NLL I+NDILDFSK+EAGKL +    F+ + +L+ +  +++  +  K IEF+ 
Sbjct: 471  IVNTAADNLLTIVNDILDFSKIEAGKLQINNQPFSPNKLLEEMVTIMAKSSHSKRIEFVF 530

Query: 707  DIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKDT 766
            D+ P +P  LIGD  R+ QV+ NL  NA+KFTS G I  S     L      +   V+DT
Sbjct: 531  DLHP-LPEKLIGDVFRIKQVLNNLLSNALKFTSSGTITFSVSGRSLPHGIHEVNITVEDT 589

Query: 767  GIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTF 826
            GIGI++     LF+AFSQ D+++ R Y GTGLGL IS++LV LM G +T+ S  G+GSTF
Sbjct: 590  GIGISRQDRKKLFNAFSQVDDALNRNYQGTGLGLVISRELVRLMNGDLTLKSVLGQGSTF 649

Query: 827  EFSVVCGLQDAKMRDISQPV-----HGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTV 881
              S+       +M  +SQ            K V++ D   + R    S+L+ +   V +V
Sbjct: 650  NVSL-------RMNQLSQKYALTSSEDWKGKNVVIFDPVPATRRSSASMLSILGAQVTSV 702

Query: 882  SNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSFLV--TAYGREIN 939
             +    +S   Q  F M  V               V  +GLR    S  V   A  R + 
Sbjct: 703  ESLDYLMSLKGQYDFFMATVP--------------VSKMGLRDTYLSRFVQFPAQKRILW 748

Query: 940  LDGENSKLVDALIVKPVNPSNLLDAIVTSYG--IEHVRHKTNEAHHNSRPNFAGQSLLLV 997
              G         + +  +    +   +T     + H       A            +L V
Sbjct: 749  YSGPEPFAQYPSLSQHFHSQARMPMTLTKLDSLVHHHTTPAKNAMQEKIGTLPKAKILAV 808

Query: 998  EDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITATEHI 1057
            +D E+N ++    L  + + +     GQ+A+ + +  +FDL+LMD+QMP MDG+ AT  I
Sbjct: 809  DDMEMNLKLLHTWLDHSPVELTTTISGQDAVNQCQTQEFDLILMDVQMPGMDGLQATREI 868

Query: 1058 RANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVD 1099
            R +P     PIVA+TA+A   + ER L +GM+D+L KPIEV+
Sbjct: 869  RKSPLNMGTPIVAVTAHAFKEEQERLLASGMDDYLPKPIEVE 910



 Score = 46.2 bits (108), Expect = 1e-08
 Identities = 27/125 (21%), Positives = 60/125 (48%)

Query: 842 ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFV 901
           + + +  L   ++L VDD +    +L + L      + T  +G +A+++ Q + FD++ +
Sbjct: 793 MQEKIGTLPKAKILAVDDMEMNLKLLHTWLDHSPVELTTTISGQDAVNQCQTQEFDLILM 852

Query: 902 DWNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLDGENSKLVDALIVKPVNPSNL 961
           D  MPGM+G++    ++   L        VTA+  +   +   +  +D  + KP+    L
Sbjct: 853 DVQMPGMDGLQATREIRKSPLNMGTPIVAVTAHAFKEEQERLLASGMDDYLPKPIEVELL 912

Query: 962 LDAIV 966
           +  ++
Sbjct: 913 IPIVL 917