Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1231 a.a., two component sensor kinase/response regulator hybrid from Agrobacterium fabrum C58

 Score =  325 bits (832), Expect = 2e-92
 Identities = 211/576 (36%), Positives = 325/576 (56%), Gaps = 55/576 (9%)

Query: 579  ILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLD 638
            I+ D+TE K  E+EL++    A+A  +AK +FLANMSHEIRTPMN +LGMA L   + LD
Sbjct: 654  IVTDVTEMKVREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSKLD 713

Query: 639  TTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698
            T Q+ +   I +S   LL IINDILDFSK+EAG++ +  + F+  + +++V +++S  A 
Sbjct: 714  TRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAAL 773

Query: 699  EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIV--LSARVSQLNEQQ 756
            EK IE ++ ID  +   +IGD  R  Q++ N+ GNAVKFT  G ++  LSA+ ++ +E  
Sbjct: 774  EKDIELIVRIDASVSGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLVELSAQSAEASESI 833

Query: 757  VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816
             +LR  V+D+GIGI  DKL+ +FD FSQ D S TR++ GTGLGL+I+  LV L  G+I V
Sbjct: 834  FSLR--VEDSGIGIPVDKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGKINV 891

Query: 817  HSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRF 876
             SE G+GS FE  +   + + + RD+      + D RVLV+DDND  R IL   L +   
Sbjct: 892  VSEVGRGSAFEVDIPFQVME-RRRDVPLLSVAIDDIRVLVIDDNDVNRRILTEQLRSWGI 950

Query: 877  NVVTVSNGFEALSEIQQK-----PFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSF-- 929
            +   V NG   ++ +Q+        D + +D++MP MNG++++ R++        K F  
Sbjct: 951  DGHAVENGPSGIAVLQEAASLGFAIDAIILDYHMPVMNGLDVVERIRA------DKRFDD 1004

Query: 930  LVTAYGREINLDGENSKLVD----ALIVKPVNP----SNLLDAIVTSYGIEHVRHKT--- 978
            +   +   +++ G+ +   D    A ++KP       S L D +V    ++ +R      
Sbjct: 1005 IAIVFLTSMDVVGDETLFTDLSVQAHLMKPARARLLRSTLFD-VVRDVRLKRIRQHPLAQ 1063

Query: 979  ----NEAHHNSRPNFAGQ-----------------SLLLVEDNEVNQEVALGLLQDTGLN 1017
                 +A   SRP    Q                  +L+ EDN+VNQ V   +LQ  GL 
Sbjct: 1064 GTGGEKARPESRPAEKKQRAEAPATVPERSRPCLLDVLVAEDNDVNQIVFSQILQQAGLR 1123

Query: 1018 VVVANHGQEALERLEHADFDLVLMDMQMPVMDGITATEHIRANPR----WHSLPIVAMTA 1073
             ++  +G+ A++  E  +  L+LMD+ MPVM+G  AT+ IRA  +       +P++ +TA
Sbjct: 1124 FLIVGNGKRAVQAWEEYNPALILMDVSMPVMNGHQATQAIRAAEQAAGDSRHVPVIGVTA 1183

Query: 1074 NAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109
            +    D ERCL+AGM+D+LSKPI  +     +  +L
Sbjct: 1184 HTQEADRERCLEAGMDDYLSKPISPESLEDKIAQWL 1219



 Score = 43.5 bits (101), Expect = 1e-07
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 854  VLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIEL 913
            VLV +DND  + +   +L       + V NG  A+   ++    ++ +D +MP MNG + 
Sbjct: 1100 VLVAEDNDVNQIVFSQILQQAGLRFLIVGNGKRAVQAWEEYNPALILMDVSMPVMNGHQA 1159

Query: 914  LTRVK----TLGLRGHMKSFLVTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSY 969
               ++      G   H+    VTA+ +E + +      +D  + KP++P +L D I    
Sbjct: 1160 TQAIRAAEQAAGDSRHVPVIGVTAHTQEADRERCLEAGMDDYLSKPISPESLEDKIAQWL 1219

Query: 970  G 970
            G
Sbjct: 1220 G 1220