Pairwise Alignments

Query, 379 a.a., two-component system response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., Cyclic di-GMP phosphodiesterase response regulator RpfG from Alteromonas macleodii MIT1002

 Score =  110 bits (276), Expect = 7e-29
 Identities = 72/240 (30%), Positives = 120/240 (50%), Gaps = 21/240 (8%)

Query: 124 HLQNKRSKDILLNQNDYLETEVLRRSGELDRMQDAVVFALASLAETRDPETGNHLLRTQH 183
           HL  + S  + L  ++ L+T       +++  Q  ++  L    E  +    N+L R   
Sbjct: 301 HLVKRFSDSVQLAFDNVLKTV------DVEATQKEIIERLGRALE-HESNASNNLTRMVE 353

Query: 184 YVKVLAQRLATTDKYRDVLSPTVIDTYFKAAPLHDIGKVGIPDNILLKPGKLTPDEFTTM 243
             ++LA+++         L+   I     A PLHDIG   +P +IL K   LT +E   +
Sbjct: 354 MAQLLAEKVG--------LNEQDIHALRLAVPLHDIGTSIVPKSILHKTTPLTEEEVFKI 405

Query: 244 RNHALLGKLALEKAEKLSGACTALINVAKEIAMGHHEKWDGSGYPLGLKGDDIPLSARLM 303
           R HA  G   L  + + +      I +A  +A  HHE+WDG GYP GL+G++I + +R+ 
Sbjct: 406 RQHAEFGYQILRDSSRPT------IQLAAMLAKQHHERWDGKGYPDGLEGEEIDIKSRIA 459

Query: 304 ALADVYDALICRRVYKEPMSHEEAKAIILQGRGSHFDPMVIDAFLIEEQNFIDIAQKFAD 363
            L DV+DAL+  R YK   + ++ +A++ +  G HFDP ++   L +   F+ I  +F D
Sbjct: 460 TLVDVFDALLNARPYKPAWTIDKVEAVLKEESGKHFDPDLVQCMLNDLPAFMAIQAQFPD 519



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 3   MEDLSQCTILIVDDSPDNIAFMSQGLAQY------YRIKAARSGKVALEILAQY-PIDLV 55
           ++DL    +LIVDD P+  A     L  +          +A SG+ A  I   +  I +V
Sbjct: 16  VDDLGSWKVLIVDDEPEVHAVTKLALNDFSLNGKTLEFVSAYSGEEAKAIFKTHDDIAVV 75

Query: 56  LLDIVM-PEMSGYEVINQIKHNPHTEHIPVIFLTGKSNPEDEQ 97
           LLD+VM  + +G +V   +++        +I  TG+     E+
Sbjct: 76  LLDVVMETDDAGLKVAEYVRNELDNHFTRIILRTGQPGQAPEK 118