Pairwise Alignments

Query, 337 a.a., galactose/methyl galactoside ABC transporter permease MglC from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., ribose ABC transporter permease from Pseudomonas simiae WCS417

 Score =  198 bits (503), Expect = 2e-55
 Identities = 123/320 (38%), Positives = 179/320 (55%), Gaps = 26/320 (8%)

Query: 22  VLFILLAIIVIQEPSFLSLRNLSNILTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLAA 81
           VL +LL    +   +FL+++NLS I  Q+SV V++A G+  +I+T G DLS G  +  +A
Sbjct: 27  VLILLLVGFALASENFLTMQNLSIISQQASVNVVLAAGMTFVILTAGIDLSVGAILAASA 86

Query: 82  VISATLLQSMDNVNKVFPSLGEIPILAVIISVCLIGAIIGLVNGVIVAYLKVTPFIATLG 141
           V++     S        P  G   I A I      G ++GLVNG ++A++++ PFI TLG
Sbjct: 87  VVALQASMS--------PQFGMFGIAAGIG----FGLLLGLVNGGLIAFMRLPPFIVTLG 134

Query: 142 TMIIVYGINSLYYDSVGASPIAGFDERFTTFTQGFIRIGDFRFSYITFYAIIAIIFM--- 198
            +  + G+  L  D          D+        F  IG+     + +  IIA+  +   
Sbjct: 135 ALTAMRGLARLLAD----------DKTVFNPDLPFAFIGNDSLLGVPWLVIIAVAVVALS 184

Query: 199 WVLWNKTVFGKNIFAVGGNPEAAKVSGVNVPLTLLKVYALSGVFYAFGGMLEAGRIGSAT 258
           W +  +TV G  I++VGGNPEAA++SG+ V   LL VYA+SG     G ++ A R+ +A 
Sbjct: 185 WFILRRTVMGVQIYSVGGNPEAARLSGIKVWKVLLFVYAMSGALAGLGAVMSASRLFAAN 244

Query: 259 N-NLGFLYELDAIAACVVGGVSFAGGVGSIAGVVTGVLIFTVINYGMTYIGVSPYWQYII 317
              LG  YELDAIAA ++GG SF GGVG+I G + G LI  V+  G+  +GVS  WQYII
Sbjct: 245 GLQLGQSYELDAIAAVILGGTSFTGGVGTIGGTLIGALIIAVLTNGLVLLGVSDIWQYII 304

Query: 318 KGSIIIFAVALDSMKYANKK 337
           KG +II AVALD  + +  +
Sbjct: 305 KGIVIIGAVALDRYRQSGAR 324