Pairwise Alignments

Query, 337 a.a., galactose/methyl galactoside ABC transporter permease MglC from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., ribose ABC transporter permease from Agrobacterium fabrum C58

 Score =  177 bits (448), Expect = 4e-49
 Identities = 109/306 (35%), Positives = 170/306 (55%), Gaps = 18/306 (5%)

Query: 21  AVLFILLAIIVIQEPSFLSLRNLSNILTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLA 80
           A L ++  ++ +   +F S+ N+ N+L Q SV  I+A+G+  +I+T G DLS G  + L 
Sbjct: 31  AGLIVVSILMGLASDNFFSVNNIMNVLRQVSVVGILAVGMTFVILTGGIDLSVGAVMALV 90

Query: 81  AVISATLLQSMDNVNKVFPSLGEIPILAVIISVCLIGAIIGLVNGVIVAYLKVTPFIATL 140
             +SA L+ +           G  P +A+   +  IG  IG+ NG +VA+ ++   I TL
Sbjct: 91  GTLSAGLMVNT----------GLSPAIALPAGL-FIGLGIGIFNGALVAWGRMPAIIVTL 139

Query: 141 GTMIIVYGINSLYYDSVGASPIAGFDERFTTFTQGFIRIGDFRFSYITFYAIIAIIFMWV 200
            TM +  G+  +Y    G  P++G     + F  G  R+G      I    I A+   WV
Sbjct: 140 ATMGMARGLGLIYS---GGYPVSGIPSWISWFGVG--RVGIVPVPVIIMVVIYAVA--WV 192

Query: 201 LWNKTVFGKNIFAVGGNPEAAKVSGVNVPLTLLKVYALSGVFYAFGGMLEAGRIGSATNN 260
           L  +T FG++++A+GGN  AA++SGV      L VY +SGV  AF  ++  GR+ S   N
Sbjct: 193 LLQRTAFGRHVYALGGNELAARLSGVKTRRVKLAVYGISGVTAAFAALILTGRLMSGQPN 252

Query: 261 LGFLYELDAIAACVVGGVSFAGGVGSIAGVVTGVLIFTVINYGMTYIGVSPYWQYIIKGS 320
            G  +ELDAIAA V+GG + AGG G I G + G ++  ++N G+  +G++PY Q +IKG 
Sbjct: 253 AGVGFELDAIAAVVLGGTAIAGGRGLILGTLIGAVLLGILNNGLNLMGINPYLQDVIKGG 312

Query: 321 IIIFAV 326
           II+ A+
Sbjct: 313 IILLAI 318