Pairwise Alignments

Query, 1023 a.a., penicillin-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1020 a.a., Membrane carboxypeptidase (penicillin-binding protein) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1006 bits (2602), Expect = 0.0
 Identities = 525/989 (53%), Positives = 687/989 (69%), Gaps = 18/989 (1%)

Query: 23   RYW---LIAVLLIGTAGGAALFHEMETSTLQSREISRYAAGLTYQVEPGASDKIAFPSYG 79
            R+W   L+ +L++  A    +  E++TS  Q++E++RYAA L + V PG +D I FP++G
Sbjct: 33   RFWQASLLVLLILCAAAALLVRREVQTSHWQAQELNRYAATLKHHVAPGPADTIRFPAHG 92

Query: 80   PFDQRLGYVALPNIQERLLQRGFTIRQQVRFSDELQRYAQYGLYVPYTEKVQAGLTLFDC 139
            PFD+R+GY A+P   ERL +RGF + +Q R S+ L  +   G + PY EK   GLT+FDC
Sbjct: 93   PFDERMGYTAIPGFAERLQERGFEVAEQSRQSEALLSHLDRGWFAPYAEKTHTGLTVFDC 152

Query: 140  RTEPVYQFRYPGNHYADFNAIPDLIVQSLLFIENRDLLSDKNPLVNPAVDWPRFFKAALT 199
              EP++ FRYP   + +F+ +P ++VQ+LLFIENRDLL  + P +NPAVDW RF +A L 
Sbjct: 153  GREPLHAFRYPYRRFENFDGVPPVVVQALLFIENRDLLDPERPQMNPAVDWVRFTRAVLA 212

Query: 200  QVGKALDLDGQSAGGSTLATQVEKYRHSEDGLTYSPQEKIRQMVSASVRAYRLGANTLEA 259
            QVG  +D D  + GGSTLATQ+EKYRHS  G+T+  +EK+RQMVSASVRAY+ G +TL  
Sbjct: 213  QVGNRIDSDIDTHGGSTLATQIEKYRHSPGGITHDAREKLRQMVSASVRAYQQGTDTLPV 272

Query: 260  RKLVVWAYLNSVPLSAAPGYGEVHGLGDGLWVWFAADPERVNQLLDTRLNQSVNLAEQGL 319
            R+ +V  YLN+VPLSAAP +GEVHGLGDGLWVWF  D E     L    +  +    +G 
Sbjct: 273  RRQLVLDYLNTVPLSAAPRHGEVHGLGDGLWVWFGTDFESAMASLSASGDDPI---ARGR 329

Query: 320  ALRQVVALMIAHRRPSYYLAVSGRPDLNALTDSHIRLFYREKMISKSLMDAALNATLQFR 379
             LRQ VALMIAHRRPS+YLA  GR DL   TD+H+RL     +I  +  DAAL  TL FR
Sbjct: 330  VLRQAVALMIAHRRPSWYLA-QGREDLEHATDAHLRLLTEAGIIDAAWRDAALAQTLVFR 388

Query: 380  DFVRQPAVTRINTNKGLLAARTHLSRQLGVSLYDLDRMDLSASTTLNFELQSEVTRYLQK 439
            D  + P       +KG  A RT L+  LG SLY LDR+D  A TTLN +LQ  V+ YL +
Sbjct: 389  DMDKDPPQLPAAASKGTTAMRTRLAGLLGASLYSLDRLDAQAGTTLNGKLQDAVSSYLGR 448

Query: 440  LANPEYAAQVGILGFRLLAAEKTADVRYSFTLFERTDEGFKVRVQTDNTNQPFDLNEGSK 499
            L +P +A+   ++G R+L      +V YSFTL E T +G  VRVQTD T QP D+NEGSK
Sbjct: 449  LTDPAFASSQQLMGERMLQPGTLDEVLYSFTLLESTPQGNLVRVQTDTTQQPLDINEGSK 508

Query: 500  LELGSTAKLRVLTTYLEIIAKLHSKYHDLSVMELRRHLVEAQDTLSVWSLEWLLTSPKRD 559
            LELGSTAKLRVL TYLE++A+LH +   L    L+   V  QD+L  W++++L  +    
Sbjct: 509  LELGSTAKLRVLATYLELVAELHGRLAPLDAAALKATTVSPQDSLGRWAVQYLSGTDDHS 568

Query: 560  LATMLEAALEREYSADPKERFFTGGGIHTFNNFRKEDDERIVTMRDALRESINLPFVRLM 619
            LATMLEAA++R +SA+P E FFTGGG+HTFNNF K+DD R  ++R+A++ SINLPFVRL+
Sbjct: 569  LATMLEAAMDRRFSANPHEPFFTGGGLHTFNNFNKKDDARQPSLREAMQASINLPFVRLL 628

Query: 620  KDIERYTLY-SEGYRAQLMKDDKDPRRMEYLRQFADKEGRAYLLRFWRKYKDKTTDERMA 678
            ++I R+TLY      A+L++D  DPRR  YL  FAD+EG+ +L RFWRK    T+ E  A
Sbjct: 629  REIVRHTLYQGPDGTARLLEDHLDPRRDTYLALFADREGQTFLRRFWRKTDKLTSTELRA 688

Query: 679  TLLEGLKPSADRLAAVHRYLLPEASVSEFVRFMDDKLPPITRDKLTD-KQLEKLYNKYGR 737
            TLL+GL+P ADRL AV RYL P AS      F+ ++L     DK  D  ++  LY ++  
Sbjct: 689  TLLDGLRPGADRLTAVFRYLEPAASPEALGAFLSERL----GDKAPDAARVAVLYQRFAP 744

Query: 738  GKYSLPDQGYIARVHPLELWLLGYLNEHHQASFSDVVAASSDKRQEVYSWLFKTRHRNAR 797
              + LPD+GY+ARVHPLELW++ Y  +H +A+  + VAAS+ +RQ VY WLF+TR ++A+
Sbjct: 745  DAFDLPDRGYVARVHPLELWVVAYRLQHPRATLDEAVAASATERQAVYKWLFRTRAKDAQ 804

Query: 798  DSRVRTMLEVEAFTDIHQSWQRLGYPFDHLVPSLATALGSSGDRPAALSELMGIILNDGV 857
            D+R+ TMLEVEAF DIH+ W RLGYPF HLVPSLATALGSSGDRPAAL+ELMG+I+N GV
Sbjct: 805  DARIYTMLEVEAFLDIHRRWTRLGYPFGHLVPSLATALGSSGDRPAALAELMGVIVNGGV 864

Query: 858  RVPTKRINHLHFAQDTPFETEFTPVETQGVRVLPVEVARALRGALSQVVDSGTARRISGV 917
            R PT+RI+ L FAQ TP+ET   P   +G RV+  EVARAL+ ALS+VV++GTARR++G 
Sbjct: 865  RRPTQRISDLRFAQGTPWETALRPTPMEGERVMAPEVARALKKALSEVVEAGTARRLAGS 924

Query: 918  FKLPDGTPIVLGGKTGTGDNRLQTVNRAGTVVQSLARNRTATFVFYLGDRHFGTLTAYVA 977
            F+   G  +  GGKTGTGDNR+  VN+ G     LA NRTATFVFYLG RHFG++TAYV 
Sbjct: 925  FQSTSGEDLSPGGKTGTGDNRV-VVNKRG----GLALNRTATFVFYLGPRHFGSVTAYVI 979

Query: 978  GSDSEKFTFTSALPVQVLKGMAPILSPYL 1006
            G ++ +  FTS LPVQ+L+ MAP+L  +L
Sbjct: 980  GPNAAEHRFTSGLPVQILRSMAPVLMAHL 1008