Pairwise Alignments

Query, 234 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

 Score =  153 bits (386), Expect = 3e-42
 Identities = 88/238 (36%), Positives = 139/238 (58%), Gaps = 12/238 (5%)

Query: 1   MSNQPSLYIIEDDTKLREMLAEYMTNQGFQVTTFATGETAPEQILLNQPDLVLLDLMLPG 60
           M +   + I++DD ++RE++  Y+   G + T  A G      +     DL++LD+M+PG
Sbjct: 1   MDHIDHIMIVDDDREIRELVGNYLKKNGLRTTVAADGRQMRALLDSTAVDLIVLDIMMPG 60

Query: 61  ENGLTICRQIRAQFLGK-----ILMLTASDDDFDHVAALEMGADDFVNKPIKPRVLLARI 115
           ++GL +CR++RA   GK     ILMLTA +D+ D +  LEMGADD++ KP   R LLARI
Sbjct: 61  DDGLVLCRELRA---GKHKATPILMLTARNDETDRIIGLEMGADDYLVKPFAARELLARI 117

Query: 116 RMLMRREERTSAS---ADATHLLQFGGLLLNQSRRH-CELDGEVINLSDSEFDLLWLLAS 171
             ++RR      +   ++A+ LL FG   L+ + RH  +  G V+NLS  E+ LL +   
Sbjct: 118 NAVLRRTRSLPPNLVVSEASRLLAFGKWRLDTTARHLMDAQGTVVNLSGGEYRLLRVFVD 177

Query: 172 AADQVVSREFLTKSLRGIEYDGLDRTVDNKIVTLRKKLCDDSSTPKRIITVRGKGYLF 229
              +V+SR+ L    +G + D  DR++D  +  LR++L DD+  P  + TVR +GY+F
Sbjct: 178 HPQRVLSRDQLLNLTQGRDADLFDRSIDLLVSRLRQRLLDDARDPAYVKTVRSEGYVF 235