Pairwise Alignments

Query, 234 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 242 a.a., Two-component transcriptional response regulator, OmpR family from Variovorax sp. SCN45

 Score =  148 bits (373), Expect = 1e-40
 Identities = 88/237 (37%), Positives = 132/237 (55%), Gaps = 6/237 (2%)

Query: 1   MSNQPSLYIIEDDTKLREMLAEYMTNQGFQVTTFATGETAPEQILLNQPDLVLLDLMLPG 60
           M   P + +++D+  + ++LA Y+   GF+VT    G      +  +  DLVLLDL LPG
Sbjct: 1   MKTTPHIVVLDDEIDITQLLANYLHGHGFRVTQVHDGRALMALMETDPADLVLLDLGLPG 60

Query: 61  ENGLTICRQIRAQFLGKILMLTASDDDFDHVAALEMGADDFVNKPIKPRVLLARIRMLMR 120
           E+G +I R++R ++   ++++T   D  D V  LE+GADD+V KP   R L+AR++ ++R
Sbjct: 61  EDGFSIARRMRERWHCGLVIVTGRGDAVDKVVGLEVGADDYVTKPFDLRELVARVKAVLR 120

Query: 121 R------EERTSASADATHLLQFGGLLLNQSRRHCELDGEVINLSDSEFDLLWLLASAAD 174
           R          SA A A  L   G  L   +R      GE + L+  EFDLL   A    
Sbjct: 121 RLAPATPVPPASAGAFADRLRFAGWQLDTAARSLLNPSGEPVTLTGGEFDLLQAFARHPG 180

Query: 175 QVVSREFLTKSLRGIEYDGLDRTVDNKIVTLRKKLCDDSSTPKRIITVRGKGYLFVP 231
           +V+SR+FL +  RG E    DRT+D ++  LRKK+  D+  P+ I +VRG GY+ VP
Sbjct: 181 RVLSRDFLLEQTRGREAAPFDRTIDVQVGRLRKKIEADAEDPQLIKSVRGAGYILVP 237