Pairwise Alignments

Query, 449 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1022 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score = 82.8 bits (203), Expect = 5e-20
 Identities = 84/311 (27%), Positives = 140/311 (45%), Gaps = 40/311 (12%)

Query: 135  AKERALERLYSAEQMTTLGQLAAGIAHELNNAIGVVSSKTERLEALFMELLEEVHPEASQ 194
            A +RA      A ++ ++GQLAAGIAHE+N  I  V      +    ++L+  +      
Sbjct: 737  ALKRAQREALQASRLASVGQLAAGIAHEINTPIQYVGDNLRFISDSLIKLMSAL------ 790

Query: 195  FFDFGLLFGQKVSSSEARERGAVFEKQYQLPKDIARELARAVPANELSAHWLKNPHLAIR 254
                          + ARE G+   +  Q+P      LA A    E +    K P L   
Sbjct: 791  --------------TAARELGS---EVGQIPA-----LAEAAAKFEAAFRTTKIPFLVA- 827

Query: 255  YWQMGRDLHDLRLAAKHSVGIVKSVKQLGRADIRLDEEVDLNSTINRALALLQSDLRRVS 314
              ++   L +          IV S+K+            D+N  ++  L + ++  +  +
Sbjct: 828  --EIPAALSESLDGVAQIARIVLSMKEFSHPGTSSKIMTDINRALDSTLTVSRNVWKHSA 885

Query: 315  VRMR--PGSLPIIKGSQTEWVQVWINLIKNACDAMAQTTEPT---IDIQTRCSRQRLYVT 369
               R    +LP +     E  QV++NLI NA  A+  + +P    I I T      + +T
Sbjct: 886  EVERNFDPTLPPVLCHAGELNQVFLNLIVNAAHAIESSGKPLPGRITISTGRDGGHVVIT 945

Query: 370  VANNGPEIDEATRRKIFQPSFTTKKEGLSFGLGLGLAIVKRIV-SGYGGTVAVKSDQ-DK 427
            VA++G  + EA R +IF P FTTK+ G   G G GLAI + +V + +GG++ +  +  D 
Sbjct: 946  VADSGTGVPEAIRERIFDPFFTTKEVGK--GTGQGLAICRDVVMTKHGGSLDLGDNAGDG 1003

Query: 428  TIFRIKLPVEG 438
             +F ++LP++G
Sbjct: 1004 AVFVVRLPIDG 1014