Pairwise Alignments

Query, 449 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., two component sensor kinase for C4-dicarboxylate transport from Agrobacterium fabrum C58

 Score = 71.6 bits (174), Expect = 5e-17
 Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 9/185 (4%)

Query: 254 RYWQMGRDLHDLRLAAKHSVGIVKSVKQLGRADIRLDEEVDLNSTINRALALLQS----D 309
           R  +   +L D+    +    I   +K L R      E V     I  A+ LL+S     
Sbjct: 278 RLAEANENLEDIAALTERIGTITTDLKILARKGRTAAEPVSARLVIEGAVVLLRSRFSGQ 337

Query: 310 LRRVSVRMRPGSLPIIKGSQTEWVQVWINLIKNACDAMAQTTEPTIDIQTRCSRQRLYVT 369
           +  + + +    L ++ GS+    Q+ INL++NA +A        ++++ R     + ++
Sbjct: 338 MDALDIVLPDQDLKVL-GSRIRLEQILINLLQNALEATETIETARVEVRVREEGDMVVIS 396

Query: 370 VANNGPEIDEATRRKIFQPSFTTKKEGLSFGLGLGLAIVKRIVSGYGGTVAVKSDQDKTI 429
           V++NG  I EA R ++F P F T KE    GLGLGL I   I S YGG + V S    T 
Sbjct: 397 VSDNGAGIPEAIRAQLFSP-FNTSKES---GLGLGLVISNDIASDYGGRIEVTSSGAGTS 452

Query: 430 FRIKL 434
           F + L
Sbjct: 453 FSVYL 457



 Score = 33.5 bits (75), Expect = 1e-05
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 143 LYSAEQMTTLGQLAAGIAHELNNAIGVVSSKTERLEAL 180
           L  A +++ LGQ+AAG+AHE+N  +  + +  +    L
Sbjct: 236 LVQANRLSILGQVAAGVAHEINQPVATIRAFADNARTL 273



 Score = 26.2 bits (56), Expect = 0.002
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 232 LARAVPANELSAHWLKNPHLAIRYWQMGRDLHDLRLAAKHSVGIVKSVKQLGRADIRLDE 291
           LA  +P   LSA WL   H A+R  +      + R  A+  + + +  + L +    L  
Sbjct: 163 LATLMPLMALSAFWLWRRHKALREKE-----EEQRARAELEMKVQERTRDLTKTRDHLQA 217

Query: 292 EVDLNSTINRALALLQSDL 310
           E+ L+      L  +Q +L
Sbjct: 218 EITLHEKTTGELRNVQHEL 236