Pairwise Alignments

Query, 487 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  133 bits (335), Expect = 1e-35
 Identities = 128/477 (26%), Positives = 216/477 (45%), Gaps = 44/477 (9%)

Query: 22  LKYIIPLLIPMLVLMLPATAFPFEGLTVIQQRVIAIFLLAALLWVFEPIPIYSTSVVIIV 81
           L  +I +L+ + VL+LP  A     L V  QR++AI   A ++W+ E +   +++++I  
Sbjct: 15  LGLVIGVLVMVGVLLLPLPA----DLPVAGQRMLAILAFAVVVWITEAVSYEASAIMITS 70

Query: 82  LEVLMLSDKGFILFRLGEGTSEFGALLKSTEIMATFANPIIMLFLGGFFLAMAATKYRLD 141
           L   +L         L + T   G+    +  +  F+NP + L  G  F+A A T   LD
Sbjct: 71  LMAFLLGTAP----SLQDPTHLIGSSPAISMALTGFSNPALALVAGALFIAAAMTHTGLD 126

Query: 142 VNLARVLLKPFGNNPKYVMLGLMMITAVFSMFM-SNTATTAMMLSILTPVIAVFGPKDPG 200
             +A V L   G + + ++LG + +T + S+ + S TA +A ++ I+  V+A FG     
Sbjct: 127 RRIALVTLTRVGTSTRGILLGAIAVTILLSLVVPSATARSACVVPIMMGVVAAFGVDKRS 186

Query: 201 RVAFALCIPVA--ANIGGIGTPIGTPPNAIALKYL--VGDNLITFAEWMAFGIPFVVILM 256
            +A  L I VA   +I  +G       N + + ++  +    +++ +W+  G P+ VI+ 
Sbjct: 187 NIAAGLMIVVAQGTSIWNVGIQTAAAQNLLTVGFMDKMLGQRVSWIDWLIAGAPWAVIMS 246

Query: 257 ALAWLLIEFMYRAEQKTI---------ELTIKGKFLKTPKAIIVYITFASTILLWML-GS 306
           A+   L+  +   E  +I          L   G      K ++        +L W   G 
Sbjct: 247 AVLLFLVIKLLPPETDSIPGGKEAVAQSLVDIGPMTGPQKRLLTVSVL--LLLAWATEGR 304

Query: 307 LHGMNSYSVALIPVAVFSVTGI---IGKEDLKMISWDVLWLVSGGIALGLALDKT----G 359
           LH  ++ S     +    + G+     K+    I W  + +   GI+LG AL  T     
Sbjct: 305 LHPFDTTSTTYAGLVFLLLPGVGVMTWKDVQSRIPWGTVIVFGVGISLGTALLTTQAGQW 364

Query: 360 LAELVVHSIPFDQYSPYVV--ILGAAILCLLMANFMSHTATANLLMPIMAALGASMTPLN 417
           L   VV     DQ  P  V  ILG A L ++   F S TA  + L+PI+ A+      L 
Sbjct: 365 LGSQVVAHTGLDQVGPLGVFAILG-AFLIVIHLGFASATALTSALLPILIAV------LQ 417

Query: 418 PLGGE---VTLILVVTFAASLGMSLPISTPPNALAHATRNVQSQQMAKVGIILGIFG 471
            L GE   + + +++ F  S G  LPI+ P N +   T    ++Q AKVGI++ + G
Sbjct: 418 TLPGEFNRLGMTMLLGFVMSYGFILPINAPQNMVCLGTGTFTARQFAKVGILVTLIG 474