Pairwise Alignments

Query, 487 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., putative transporter from Pseudomonas putida KT2440

 Score = 57.0 bits (136), Expect = 2e-12
 Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 8/115 (6%)

Query: 153 GNNPKYVMLGLMMITAVFSMFMSNTATTAMMLSILTPVIAVFGPKDPGRVAFALCIPVAA 212
           G  P  ++  L  +TAV  +F+SNTAT  +M  +     A  G        FA+ + +AA
Sbjct: 501 GAGPSAILACLFAVTAVIGLFISNTATAVLMAPVAVSTAAQLGMSP---YPFAMTVALAA 557

Query: 213 NIGGIGTPIGTPPNAIALKYLVGDNLITFAEWMAFGIPFVVILMALAWLLIEFMY 267
           +     TP+ +P N + L    G     FA+++  G+PF V++M +  +++ + +
Sbjct: 558 S-AAFMTPVSSPVNTLVL----GPGQYRFADFVKIGVPFTVLVMLVTVVMVPWFF 607



 Score = 52.0 bits (123), Expect = 6e-11
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 8/153 (5%)

Query: 335 KMISWDVLWLVSGGIALGLALDKTGLAELVVHSIP--FDQYSPYVVILGAAILCLLMANF 392
           + I W  L L+ G +    AL KTG  +L V  +        P  ++     +  ++  F
Sbjct: 462 RAIHWQSLVLIVGMLPFAQALQKTGGIDLAVGGLVNVLGGAGPSAILACLFAVTAVIGLF 521

Query: 393 MSHTATANLLMPIMAALGASMTPLNPLGGEVTLILVVTFAASLGMSLPISTPPNALAHAT 452
           +S+TATA L+ P+  +  A +  ++P    +T+ L    AAS     P+S+P N L    
Sbjct: 522 ISNTATAVLMAPVAVSTAAQLG-MSPYPFAMTVAL----AASAAFMTPVSSPVNTLVLGP 576

Query: 453 RNVQSQQMAKVGIILGIFGVLMSFVMV-WILNM 484
              +     K+G+   +  +L++ VMV W   +
Sbjct: 577 GQYRFADFVKIGVPFTVLVMLVTVVMVPWFFGL 609



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 21/166 (12%)

Query: 300 LLWMLGSL---------HGMNSYSVALIPVAVFSVTGIIGKED-LKMISWDVLWLVSGGI 349
           LLW+LG L         +      VAL+ +    + GI+  E  L   S   + L++   
Sbjct: 5   LLWVLGLLAIVIILFVINRPRMDVVALLVILALPLLGILTVEQALAGFSDPNVVLIAALF 64

Query: 350 ALGLALDKTGLAELV---VHSIPFDQYSPYVVILGAAILCLLMANFMSHTATANLLMPIM 406
            +G  L +TG+A  +   +     +  +  +V+L  A+  L   + MS T    + +P++
Sbjct: 65  VIGEGLVRTGIAYRIGEWMSERAGNSEARLLVLLMVAVAGL--GSIMSSTGVVAIFIPVV 122

Query: 407 AALGASMTPLNPLGGEVTLILVVTFAASL-GMSLPISTPPNALAHA 451
            ++ A +  L+P      L++ + FA  + GM   ++TPPN + H+
Sbjct: 123 LSIAARLQ-LSPS----RLMMPLAFAGLISGMLSLVATPPNVVVHS 163