Pairwise Alignments

Query, 487 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 517 a.a., membrane protein from Magnetospirillum magneticum AMB-1

 Score =  118 bits (295), Expect = 6e-31
 Identities = 127/494 (25%), Positives = 219/494 (44%), Gaps = 47/494 (9%)

Query: 12  SGRVNMMRPYLKYIIPLLIPMLVLMLPATAFPFEGLTVIQQRVIAIFLLAALLWVFEPIP 71
           SGR  ++   L   +  L+ +++L LPA   P  GL     R++AI + A ++W+ E +P
Sbjct: 32  SGRTEILG--LGVALAALVAIILLPLPAGLHP-AGL-----RMMAIMVFAVIIWMTEAVP 83

Query: 72  IYSTSVVIIVLEVLMLSDKGFILFRLGEGTSEFGALLKSTEIMAT----FANPIIMLFLG 127
              ++ VI+ L  L L         LG   ++   L+ S++ +      F+N    L  G
Sbjct: 84  YAVSAAVIVSLIALALG--------LGPALADPTKLMGSSKALGMALSGFSNTAFALVAG 135

Query: 128 GFFLAMAATKYRLDVNLARVLLKPFGNNPKYVMLGLMMITAVFSMFM-SNTATTAMMLSI 186
             F++ A     LD  +A V+L   G     V+ G++      S  + S TA  + M+ I
Sbjct: 136 AMFISAAMMITGLDKRIALVILSRLGARTGRVLAGVIFTGFALSFLVPSTTARVSCMVPI 195

Query: 187 LTPVIAVFGPKDPGRVAFALCIPVAA--NIGGIGTPIGTPPNAIALKYLVGD--NLITFA 242
           +  +I  FG     R A  L I  A   ++  +G       N IA+ ++       +++ 
Sbjct: 196 VMGIIVAFGVDRRSRFAAVLMIATAQADSLWNVGIKTAAAQNMIAVSFIEKQLHYSVSWL 255

Query: 243 EWMAFGIPFVVILMALAWLLIEFMYRAEQKTIE---LTIKGKF--LKTPKAIIVYITFAS 297
           EW     PF  ++  + + L+  +   E   IE    TI  K   L    A    +   S
Sbjct: 256 EWFVAAAPFSAVMSVILYFLLMKLLPPEVDEIEGGKATIAAKLAELGPMTAGEKKLLTIS 315

Query: 298 TILL--WMLGS-LHGMNSYSVALIPVAVFSVT--GIIGKEDLKM-ISWDVLWLVSGGIAL 351
            ILL  W     LH  ++ +  ++ + +  V   G++  +D +  I W  L L   GI+L
Sbjct: 316 LILLCFWTTEKVLHDFDTSTTTMVAITLMLVPRIGVMDWKDAQARIGWGTLILFGVGISL 375

Query: 352 GLALDKTG----LAELVVHSIPFDQYSPY-VVILGAAILCLLMANFMSHTATANLLMPIM 406
           G  L  TG    +A+ +V +   + +    +V + A  L ++   F S T  A  ++PI+
Sbjct: 376 GQCLLDTGAASWMAKYIVATFGMENFPAIGIVAVLALFLIVVHLGFASATGLAAAMIPII 435

Query: 407 AALGASM-TP-LNPLGGEVTLILVVTFAASLGMSLPISTPPNALAHATRNVQSQQMAKVG 464
            A+  S+ TP +N +G    + ++  +  S G  LP++ P N + + T   QS+   + G
Sbjct: 436 IAVLQSIKTPGINIVG----MTMIAQYVVSFGFILPVNAPQNMVVYCTETFQSKDFIRTG 491

Query: 465 IILGIFGVLMSFVM 478
           I L I   +M  VM
Sbjct: 492 IPLTIIAYIMILVM 505