Pairwise Alignments

Query, 487 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., Na(+)/dicarboxylate symporter from Alteromonas macleodii MIT1002

 Score =  159 bits (401), Expect = 3e-43
 Identities = 136/452 (30%), Positives = 221/452 (48%), Gaps = 67/452 (14%)

Query: 56  AIFLLAALLWVFEPIPIYSTSVVIIVLEVLMLSDKGFILFRLGEGTSEFGALLKSTEIMA 115
           AI L  A+LWV E +PI +TS++             F LF L      FG L  S E  +
Sbjct: 51  AITLFVAVLWVTEALPIPATSLL------------PFALFPL------FGVLSHS-EAAS 91

Query: 116 TFANPIIMLFLGGFFLAMAATKYRLDVNLARVLLKPFGN-NPKYVMLGLMMITAVFSMFM 174
              + +I+L +  F L+    +  L    A  +L+  G+ +P  ++LG M+ TAV SM++
Sbjct: 92  ALGSHVIILLMAAFMLSKGLERANLHKRFAIYMLRITGSGSPLKLVLGFMLTTAVLSMWI 151

Query: 175 SNTATTAMMLSILTPVIAVFGPKDPGRVAFALCIPVA--ANIGGIGTPIGTPPNAIALKY 232
           SNTAT  MML +    IA+    D  R   AL + +A  A++GG+GTPIGTPPN I +  
Sbjct: 152 SNTATILMMLPM---AIAIINAVDNPRFGVALILGIAYSASLGGVGTPIGTPPNIIFMSV 208

Query: 233 LVGDNLI--TFAEWMAFGIPFVVI---LMALAWLLIEFMYRAEQKTIELTIKGKFLKTPK 287
                 I  +F +WM  G+P V++   +MAL WL        +   I+L + G + K  K
Sbjct: 209 YEETQGIEYSFIDWMKTGVPIVILGVPIMAL-WLARGIK---QVGNIDLPVPGTWTKAEK 264

Query: 288 AIIVYITFASTILLWMLGSLH----GMNSYSVALIPVA-----VFSVTG----------- 327
            ++    F +  L W+         G+++ S + I VA      F+ +G           
Sbjct: 265 RVLAI--FGTVALAWIFRPFWTAWIGISTISDSTIAVAGVAAMFFTNSGNDNGEVDEKGN 322

Query: 328 ---IIGKEDLKMISWDVLWLVSGGIALGLALDKTGLAELVVHSIPFDQYSPYVV-ILGAA 383
              ++  +    I W +L L +GGI +  A   +GL+ L+   +      P ++ +LG  
Sbjct: 323 NDKLLDWKTANDIPWGMLLLFAGGICIAKAFMSSGLSVLMGTWLTGLSTLPVLLLVLGIC 382

Query: 384 ILCLLMANFMSHTATANLLMPIMAALGASMTPLNPLGGEVTLILV-VTFAASLGMSLPIS 442
           +    +    S+TAT+ LLMPI+AA G ++      G +  L+++    +AS    LP++
Sbjct: 383 LFVTFLTEITSNTATSTLLMPILAAAGMAV------GVDPKLLMIPAAISASCAFMLPVA 436

Query: 443 TPPNALAHATRNVQSQQMAKVGIILGIFGVLM 474
           T PNA+A++T     + MA+ G++L +   L+
Sbjct: 437 TAPNAIAYSTEKFDIKTMAREGVVLNVLVALV 468



 Score = 53.5 bits (127), Expect = 2e-11
 Identities = 51/208 (24%), Positives = 103/208 (49%), Gaps = 14/208 (6%)

Query: 291 VYITFASTILLWMLGSLHGMNSYSVALIPVAVFSVTGIIG-KEDLKMISWDVLWLVSGGI 349
           +  T A T+ + +L     +   + +L+P A+F + G++   E    +   V+ L+    
Sbjct: 46  IIFTAAITLFVAVLWVTEALPIPATSLLPFALFPLFGVLSHSEAASALGSHVIILLMAAF 105

Query: 350 ALGLALDKTGL-AELVVHSIPF-DQYSPYVVILGAAILCLLMANFMSHTATANLLMPIMA 407
            L   L++  L     ++ +      SP  ++LG  +   +++ ++S+TAT  +++P+  
Sbjct: 106 MLSKGLERANLHKRFAIYMLRITGSGSPLKLVLGFMLTTAVLSMWISNTATILMMLPMAI 165

Query: 408 ALGASMTPLNPLGGEVTLILVVTFAASL-GMSLPISTPPN----ALAHATRNVQSQ--QM 460
           A+  ++   NP  G V LIL + ++ASL G+  PI TPPN    ++   T+ ++      
Sbjct: 166 AIINAVD--NPRFG-VALILGIAYSASLGGVGTPIGTPPNIIFMSVYEETQGIEYSFIDW 222

Query: 461 AKVGIILGIFGV-LMSFVMVWILNMVGH 487
            K G+ + I GV +M+  +   +  VG+
Sbjct: 223 MKTGVPIVILGVPIMALWLARGIKQVGN 250



 Score = 45.4 bits (106), Expect = 4e-09
 Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 12/189 (6%)

Query: 48  TVIQQRVIAIFLLAALLWVFEPIPIYSTSVVIIVLEVLMLSDKGFILF-RLGEGTSEFGA 106
           T  ++RV+AIF   AL W+F P       +  I    + ++    + F   G    E   
Sbjct: 260 TKAEKRVLAIFGTVALAWIFRPFWTAWIGISTISDSTIAVAGVAAMFFTNSGNDNGEVDE 319

Query: 107 LLKSTEIMA-TFANPI----IMLFLGGFFLAMAATKYRLDVNLARVLLKPFGNNPKYVML 161
              + +++    AN I    ++LF GG  +A A     L V +   L          ++L
Sbjct: 320 KGNNDKLLDWKTANDIPWGMLLLFAGGICIAKAFMSSGLSVLMGTWLTGLSTLPVLLLVL 379

Query: 162 GLMMITAVFSMFMSNTATTAMMLSILTPVIAVFGPKDPGRVAFALCIPVAANIG-GIGTP 220
           G+ +     +   SNTAT+ +++ IL       G  DP      L IP A +       P
Sbjct: 380 GICLFVTFLTEITSNTATSTLLMPILAAAGMAVG-VDPK----LLMIPAAISASCAFMLP 434

Query: 221 IGTPPNAIA 229
           + T PNAIA
Sbjct: 435 VATAPNAIA 443