Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  257 bits (656), Expect = 9e-73
 Identities = 188/546 (34%), Positives = 290/546 (53%), Gaps = 13/546 (2%)

Query: 1   MFLKNLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENV-DAIK 59
           M L+N+ IG + + SF V+A + +   ++ + ++ K++   L      +P++EN+ D+  
Sbjct: 1   MSLRNMRIGLRASLSFGVLASLLVIVGMFGLGQMAKLRQSALVIEASWMPSIENIHDSAA 60

Query: 60  DKMSYWRRTQFAVLPMKDEAQIRQTIERNNRVQAEINDSLVAYGKTVWPGEEE-QTFKRL 118
              S   R +   L   DE++IR   +     Q     +L+ + KT+  G+EE +   +L
Sbjct: 61  IVASI--RLEALRLATTDESRIRDNSKALITRQHTELQTLLDHHKTLLSGDEEREMLTQL 118

Query: 119 MGNWNAYTAVTDQFNQTLLTQGADDAYPILANSLSTFEA-LESDFTLLIGILHQAMDSNK 177
            GN NAY ++  Q    +      DA  +L + L+     L    T +I      + +  
Sbjct: 119 EGNANAYLSLVGQIVALVDKDQQQDAIDLLNSRLAPQGVILNKSLTDMITFNQSGVQT-- 176

Query: 178 VQILSSVKTLNSTS-VASNIAILAIM--VLMTWLLTRLICGPLAIVMKQSNAIAKGDLSQ 234
             + S+ +T +S   +  +I +LA+   +L+ WLLTR I  PL   +  +  IA GDLSQ
Sbjct: 177 -AVDSAAQTYSSAQWIVGSIIVLALTATLLLAWLLTRSITAPLGQALIVARTIASGDLSQ 235

Query: 235 TMDRSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKE 294
            +  S  G DE   L  A   MQ  L+  +  I  +  QL  A EEM+ +  QS   ++ 
Sbjct: 236 PIAVS--GKDEPAQLLTALATMQAQLQGTLRGISESAQQLGCAAEEMSSVMEQSTRDLQA 293

Query: 295 QQYQITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADI 354
           Q  +I Q ATA+ +M AAV +VA N   SA  + A++  S+ G  + +  + SIQ + D 
Sbjct: 294 QNDEIEQAATAVTEMSAAVDEVAGNAVSSAEASQASDEDSKHGHYQISETISSIQNLVDE 353

Query: 355 IGEAGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEV 414
           +  A      L  Q+  I+ V++VIR IA QTNLLALNAAIEAARAGE+GRGFAVVADEV
Sbjct: 354 VLGASNKAEGLAVQAQDISKVLEVIRGIAAQTNLLALNAAIEAARAGEAGRGFAVVADEV 413

Query: 415 RTLAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESI 474
           R+LA RTQDST EI  +I  +Q   +   +A   S       +++ N + S +  I  +I
Sbjct: 414 RSLAQRTQDSTEEIEQMITGIQQGTQGTVEALNSSAEQAGHTLQRANSAGSALEKITAAI 473

Query: 475 ANIADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQ 534
           + I+     IASA  +Q  VA ++ R++ NI   S + A G+ QT+ A +EL++LAV L 
Sbjct: 474 SQISQRNLVIASAAEQQALVARDVDRSLVNIRDLSTQTAAGATQTSAASQELSRLAVDLN 533

Query: 535 DTLRRF 540
             + RF
Sbjct: 534 GLVARF 539