Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 635 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  234 bits (596), Expect = 1e-65
 Identities = 139/346 (40%), Positives = 206/346 (59%), Gaps = 2/346 (0%)

Query: 197 AILAIMVLMTWLLTRLICGPLAIVMKQSNAIAKGDLSQTMDRSSIGNDELGTLANASEQM 256
           A L + VL  W++   I  PL   +  +N IA+GDLS  +       DELG L ++  QM
Sbjct: 292 AALLLGVLAAWVIAGQIVTPLRKALSVANRIAEGDLSHEVQTRR--KDELGQLQHSMTQM 349

Query: 257 QQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQITQVATAMAQMKAAVADV 316
             NLR LI  I     Q++SA EE++ I+ Q+  G+  Q+ +  QVA AM QM A   +V
Sbjct: 350 TLNLRGLIGNISDNAQQIASAAEELSTITEQTRAGVSNQREETEQVAAAMNQMLATAQEV 409

Query: 317 ARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGEAGQTVSELEQQSSQINVVV 376
           AR+ E ++  A  ANH++  G +    +V  I+ +A  +  + Q +  L+++S +I  V+
Sbjct: 410 ARHAEQASIAAGQANHQTDLGDQVVTDVVAQIEHLAHEMARSSQAMLALQRESQKIGSVL 469

Query: 377 DVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAGRTQDSTGEITTIIEKLQ 436
           DVI+S++ QTNLLALNAAIEAARAGE+G+GFAVVADEVR+LA RTQ S  EI  +I  L 
Sbjct: 470 DVIKSVSQQTNLLALNAAIEAARAGEAGQGFAVVADEVRSLAQRTQQSAEEIEELIGGLH 529

Query: 437 VMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIADVGTQIASACSEQDSVAD 496
              +Q  D  + SR+  D  V    ++   +  I  ++  I ++  QIA+A  EQ +VA+
Sbjct: 530 SGTQQVADILDYSRTLTDNSVGLARNAGDALSEIARTVLVIQEMNPQIAAAAEEQSAVAE 589

Query: 497 ELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLRRFKI 542
           E++R+V  +  AS++ A  S+QTA A  EL +L   LQ  + +FK+
Sbjct: 590 EINRSVLKVRDASEQTAAASEQTAAASIELARLGTDLQQCVGQFKV 635