Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  255 bits (651), Expect = 3e-72
 Identities = 177/545 (32%), Positives = 279/545 (51%), Gaps = 7/545 (1%)

Query: 1   MFLKNLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKD 60
           M L+ L+I  +    F+ IA++ +   ++ ++ + +I+   +  T   LP++ ++  I +
Sbjct: 1   MSLRQLNIAPRAFLGFAFIALLVILLGVFAVNRMAQIRQSSVEMTATQLPSVTSLGVITE 60

Query: 61  KMSYWRRTQFAVLPMKDEAQIRQTIERNNRVQAEINDSLVAYGKTVWPGEEEQTFKRLMG 120
            +   R   F VL  ++ A +++   R   +  ++  +  +Y       EE   +K  M 
Sbjct: 61  NVLRLRILSFRVLVNREPASLQEAETRIGVLVDKVKTAQASYAALPAGPEEAALYKTFMV 120

Query: 121 NWNAYT-AVTDQFNQTLLTQGADDAYPILANSL--STFEALESDFTLLIGILHQAMDSNK 177
             + Y  A  D     L  QG  D    L NS      + +      LI I      +  
Sbjct: 121 TLDNYLKAQADML--ALSKQGKVDEMRALINSRIKDGTDQMGEQLNKLIAINVADAKTAD 178

Query: 178 VQILSSVKTLNSTSVASNIAILAIMVLMTWLLTRLICGPLAIVMKQSNAIAKGDLSQTMD 237
                S     +  +A ++A   + VL+ WLLTR I  PL   ++ +  IA G+LS+ ++
Sbjct: 179 TDAGQSYDGAITGVIAVSVAAALLTVLLAWLLTRSIVTPLRKAVEVAETIAGGNLSKAIE 238

Query: 238 RSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQY 297
               G DE   L  A   MQ NLRQ I  I  + TQL+SA EE++ ++ +++ G+++Q  
Sbjct: 239 DD--GKDEPARLLGALATMQANLRQTIQHIAGSATQLASAAEELSAVTEEASKGLQQQNN 296

Query: 298 QITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGE 357
           +I Q ATA+ +M AAV +VARN   ++  +  +N  ++EG       V +IQ +   +  
Sbjct: 297 EIDQAATAVNEMTAAVEEVARNAVSTSEASSQSNQAAREGRDRVVETVGAIQTMTQDVQN 356

Query: 358 AGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTL 417
               +  L  Q   I  V+DVIR+IA+QTNLLALNAAIEAARAGE+GRGFAVVADEVR L
Sbjct: 357 TAAMIEGLATQGRDIGKVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRAL 416

Query: 418 AGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANI 477
           A RT  ST EI  ++  +Q    +A  + ++S       +E    +   +  I +SI+ I
Sbjct: 417 AHRTAQSTQEIEKMVAGIQNGTGEAVQSMQQSNQRTQTTLEMARAAGVALEQITQSISLI 476

Query: 478 ADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTL 537
            +    IASA  EQ  V+ E+ RN+ NI   + + A G+ QT+ A  EL++LAV L   +
Sbjct: 477 NERNLVIASASEEQAQVSREVDRNLVNIRDLATQSAAGANQTSAASHELSRLAVDLNGMV 536

Query: 538 RRFKI 542
            RF I
Sbjct: 537 ARFVI 541