Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  232 bits (591), Expect = 3e-65
 Identities = 162/543 (29%), Positives = 277/543 (51%), Gaps = 3/543 (0%)

Query: 1   MFLKNLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKD 60
           M +++L+I  +    F V+A++      + + ++  ++ +     ++ LP++  V  +  
Sbjct: 1   MSIRSLNIAPRAGLGFGVLALMVFALGGFALLQMANMRQQSDQVENNWLPSVMAVGDMSQ 60

Query: 61  KMSYWRRTQFAVLPMKDEAQIRQTIERNNRVQAEINDSLVAYGKTVWPGEEEQTFKRLMG 120
            +   R     +L  +D   + Q  ++   ++A ++ +   Y   +    E+  F R   
Sbjct: 61  DLLRIRALTLRLLVNRDPQALAQNEQKLTEIKANLHRARTLYQGLIVLPAEQVLFDRFKA 120

Query: 121 NWNAYTAVTDQFNQTLLTQGADDAYPILANSLSTFEALESDFTLLIGILHQAMDSNKVQI 180
               Y    +Q          +DA  ++   ++      +     +  L++   +    +
Sbjct: 121 EEARYLERQEQVVTLSKANQLEDAIRVVNGEMNQLADEMAATLRELVTLNKTSANQAASL 180

Query: 181 LSSVKTLNSTSVASNIAILAIMVL-MTWLLTRLICGPLAIVMKQSNAIAKGDLSQTMDRS 239
             SV + +   V   I + A++ + +  LLTR I  PLA  +K +  +A GDL  T + S
Sbjct: 181 AQSVFSQSRIWVIGMIVLTALVTIGLAVLLTRSIVLPLAQSLKVAQGVASGDL--TGEIS 238

Query: 240 SIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQYQI 299
             G DE   L  A + MQ+NLR  I  I  +  QL+SA EE++ ++  +  G+ +Q  +I
Sbjct: 239 VCGRDEPARLQQALKSMQENLRDTIRRISESSNQLASASEELSCVTEDATRGLHQQSQEI 298

Query: 300 TQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIGEAG 359
            Q ATA+ QM AAV +VA N   ++  +  ++  +Q G  +    V SI+ +A  + +  
Sbjct: 299 EQAATAVNQMTAAVEEVASNAVATSQASRESDRIAQRGREQVQQTVVSIEALATDVTDNV 358

Query: 360 QTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAG 419
             V +L Q+   I+ V+DVIRSIA+QTNLLALNAAIEAARAG++GRGFAVVADEVR LA 
Sbjct: 359 TQVEDLAQKVYGISKVLDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAH 418

Query: 420 RTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIANIAD 479
           RTQ ST EI  +I  +Q    QA  + ++S +     ++    + + +  I  +   I +
Sbjct: 419 RTQQSTQEIEQMISGIQQGTDQAVSSMQQSNTRARSTLDIAKSAGTALEEIASAFTLINE 478

Query: 480 VGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDTLRR 539
               IASA  +Q +VA E+ RN+ NI   + + + G+ QT+ A  +L++LAV L   + R
Sbjct: 479 RNLVIASASEQQAAVAREVDRNLMNIRDLAHQTSTGANQTSAASHDLSRLAVDLNTLVAR 538

Query: 540 FKI 542
           F +
Sbjct: 539 FSV 541