Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  222 bits (566), Expect = 2e-62
 Identities = 163/554 (29%), Positives = 273/554 (49%), Gaps = 24/554 (4%)

Query: 1   MFLKNLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKD 60
           M L+ L++  +    F V  ++ +   +  + +  ++ +       + LP+++ + +I  
Sbjct: 1   MILRKLNLAARSTLCFGVFCLMIIALGLLALRQAAELNAAEKFIETNVLPSVKQLASIDR 60

Query: 61  KMSYWRRTQFAVLPMKDEAQIRQTIERNNRVQAEIND-----SLVA-----YGKTVWPGE 110
           +    R          + A++R  IE  +R    ++D     SL+A      GK +   +
Sbjct: 61  EFVSIRG---------NNARVRNPIEPQDRKTKALSDIQQSRSLIAGYFDTLGKLIVTPQ 111

Query: 111 EEQTFKRLMGNWNAYTAVTDQFNQTLLTQGADDAYPILANSL-STFEALESDFTLLIGIL 169
             Q F  L      Y    D++  ++     + A       + S  + +E+    LIG+ 
Sbjct: 112 GRQAFDELSQAQAGYQVAQDRYLASVAAGNLEAAVATSNGEMKSAADQVETGLKKLIGVN 171

Query: 170 H-QAMDSNKVQILSSVKTLNSTSVASNIAILAIMVLMTWLLTRLICGPLAIVMKQSNAIA 228
             +A  +      +  +TL    +   + ++  + L+ W+ TR + GP+   +  +  IA
Sbjct: 172 DAKAEKAGAAANAAYQQTLWMVGIFITVGVITTL-LLAWMYTRSLTGPIGDSLSIAQRIA 230

Query: 229 KGDLSQTMDRSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQS 288
             DLSQ + +   G DE   L  A   MQ NLR  +  I  + TQL++  EEM  ++  +
Sbjct: 231 TNDLSQDIPQH--GTDEAAKLIAALATMQSNLRNALTLIGDSSTQLAATSEEMHAVTEDA 288

Query: 289 ADGMKEQQYQITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSI 348
           +  +  Q  +I   ATA+ +M AAV +VA N   ++     ++  +  G  +    V +I
Sbjct: 289 SRTILRQTNEIEMAATAVNEMSAAVEEVASNAASASEVTSQSSTAAMAGRAQVDETVTAI 348

Query: 349 QQVADIIGEAGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFA 408
             +   +      V  L   ++ I+ V+DVIR+IA+QTNLLALNAAIEAARAGE+GRGFA
Sbjct: 349 NLMVSKVQITSTEVQGLAVMATDISKVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFA 408

Query: 409 VVADEVRTLAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMI 468
           VVADEVR LA RTQ ST EI  +++ +Q     A  A E++     K +E  N +   ++
Sbjct: 409 VVADEVRALAHRTQQSTREIEQMVDSIQTGTGNAVSAMEQTSVQAHKTLEMANGAGKALL 468

Query: 469 SIEESIANIADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQ 528
            I ESI+ I +    IA+A  EQ  VA E+ R++ +I   S + ++GS QTA A  EL+ 
Sbjct: 469 EITESISQINERNLMIATAAEEQAQVAREVDRSLVSIRDLSSQTSEGSNQTAIATAELST 528

Query: 529 LAVSLQDTLRRFKI 542
           LA SL    ++F++
Sbjct: 529 LASSLNRLTKQFRV 542