Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score =  243 bits (620), Expect = 1e-68
 Identities = 171/546 (31%), Positives = 282/546 (51%), Gaps = 9/546 (1%)

Query: 1   MFLKNLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKD 60
           M +++L+I  +    F ++A++      + + ++  ++++     ++ LP++  V  +  
Sbjct: 1   MNIRSLNIAPRAGLGFGLLALMVFALGAFALLQMSNMRAQSDEVDNNWLPSVMAVGEMSQ 60

Query: 61  KMSYWRRTQFAVLPMKDEAQIRQTIERNNRVQAEINDSLVAYGKTVWPGEEEQTFKRLMG 120
            M   R     +L  +D   + Q + + + +++ ++++   Y   +   EE   F+R  G
Sbjct: 61  DMLRLRALTMRLLLNRDPKALEQNVAKLDELRSGLSEAQQRYDALIVLPEERVLFERFKG 120

Query: 121 NWNAYTAVTDQFNQTLLTQGADDAYPILANSLSTFEALESDFTLLIGILHQAMDSNKVQI 180
             + Y  +  Q  Q        +A  IL + +S    L  +    +  L +    N    
Sbjct: 121 TEHKYLELQAQVLQLSAQNRVAEAATILNDQMSP---LADEIAATLRELVELNKQNAGLA 177

Query: 181 LSSVKTLNSTS---VASNIAILAIMVL-MTWLLTRLICGPLAIVMKQSNAIAKGDLSQTM 236
             + + +   S   VA  IA+ A++ + +  LLTR I  PL+  +  +  +A GDL  T 
Sbjct: 178 TEAARLVFKQSRLWVAVMIAMAALITVGLALLLTRSIVVPLSQSLSVAEVVAGGDL--TG 235

Query: 237 DRSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMKEQQ 296
           D    G DE   L  A + MQ NLR  I  I  + TQL+SA EE++ ++  +  G+ +Q 
Sbjct: 236 DIHITGKDEPARLLQALKSMQHNLRDTIRRISESSTQLASAAEELSSVTEDATRGLHQQS 295

Query: 297 YQITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVADIIG 356
            +I Q ATA+ QM AAV +VA N   ++  +  ++  +++G  +    V SI+ +A  + 
Sbjct: 296 QEIEQAATAVNQMTAAVEEVANNAVATSEASRESDRIARQGREQVQQTVTSIEFLAGDVT 355

Query: 357 EAGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRT 416
                V  L Q+   I+ V+DVIRSIA+QTNLLALNAAIEAARAG++GRGFAVVADEVR 
Sbjct: 356 NNAAQVEALAQKVHGISKVLDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRA 415

Query: 417 LAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEESIAN 476
           LA RTQ ST EI  +I  +Q     A  + ++S S     +E    + S +  I  +   
Sbjct: 416 LAHRTQQSTQEIEQMIGGIQQGTDSAVSSMQQSNSRARSTLELAKSAGSALEEIASAFTL 475

Query: 477 IADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSLQDT 536
           I +    IASA  EQ +VA E+ RN+ NI   + + + G+ QT+ A +EL++LAV L   
Sbjct: 476 INERNLVIASASEEQAAVAREVDRNLMNIRDLAMQTSAGANQTSAASQELSKLAVDLNGM 535

Query: 537 LRRFKI 542
           + RF +
Sbjct: 536 VARFSV 541